bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_1613_orf1
Length=145
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_025260 DNA-directed RNA polymerase II largest subun... 261 4e-70
bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II lar... 239 2e-63
cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymer... 236 2e-62
tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit (... 232 2e-61
pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006 ... 228 7e-60
ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); ... 218 8e-57
cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1); K... 205 3e-53
dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA direct... 204 1e-52
mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II (D... 201 5e-52
hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2, RP... 201 6e-52
sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K030... 201 9e-52
hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III ... 173 2e-43
mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1, RP... 173 2e-43
dre:100334143 polymerase (RNA) III (DNA directed) polypeptide ... 172 2e-43
cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member... 167 2e-41
tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit ... 164 1e-40
cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03... 163 2e-40
ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA pol... 160 2e-39
sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA... 160 2e-39
pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit (E... 159 4e-39
tgo:TGME49_106290 DNA-directed RNA polymerase III largest subu... 155 4e-38
bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain cont... 154 1e-37
ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA pol... 135 5e-32
cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA pol... 130 2e-30
sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-direct... 127 9e-30
xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa; K... 126 2e-29
bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2... 126 2e-29
tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directe... 124 8e-29
mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1... 122 4e-28
pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymer... 122 5e-28
tgo:TGME49_044880 DNA-directed RNA polymerase I largest subuni... 121 8e-28
hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA... 120 1e-27
dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polym... 120 1e-27
cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-direct... 116 2e-26
ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DN... 57.8 1e-08
dre:100334761 DNA-directed RNA polymerase II A-like 49.3 4e-06
tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein... 47.4 2e-05
ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-d... 45.8 4e-05
eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta pr... 45.4 6e-05
bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA pol... 39.7 0.004
tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2... 35.0 0.087
mmu:72047 Ddx42, 1810047H21Rik, AW319508, AW556242, B430002H05... 29.3 4.2
ath:AT3G16370 GDSL-motif lipase/hydrolase family protein 29.3 4.3
hsa:11325 DDX42, FLJ43179, RHELP, RNAHP, SF3b125; DEAD (Asp-Gl... 29.3 4.4
tgo:TGME49_075320 penicillin amidase domain-containing protein... 29.3 4.6
cel:ZK370.2 sma-2; SMAll family member (sma-2) 28.9 5.3
xla:431953 ccdc149, MGC83813; coiled-coil domain containing 149 28.9
> tgo:TGME49_025260 DNA-directed RNA polymerase II largest subunit,
putative (EC:2.7.7.6 3.5.1.16); K03006 DNA-directed RNA
polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1892
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 125/142 (88%), Positives = 131/142 (92%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
ARVNKELN+ARE+S KVA+E LDESNNIMAMVLAGSKGS INISQIMACVGQQNVEGKRI
Sbjct 742 ARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRI 801
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GFN RSLPHF KFDY P+SRGFVE+SYL+GL P ELFFHAMGGREGIIDTACKTSETG
Sbjct 802 PFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETG 861
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
YIQRRLMKAMEDV V YDRTVR
Sbjct 862 YIQRRLMKAMEDVMVYYDRTVR 883
> bbo:BBOV_I003360 19.m02399; DNA-directed RNA polymerase II largest
subunit (EC:2.7.7.6); K03006 DNA-directed RNA polymerase
II subunit RPB1 [EC:2.7.7.6]
Length=1746
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/142 (77%), Positives = 126/142 (88%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
ARVNKELN ARE+S +A++ LDE NNI+AMV +GSKGS INISQI+ACVGQQNVEGKR+
Sbjct 729 ARVNKELNEAREQSGTIAAKSLDERNNILAMVNSGSKGSTINISQIIACVGQQNVEGKRV 788
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF +RSLPHF K DY PESRGFV +SYL+GL PQE+FFHAMGGREG+IDTACKTSETG
Sbjct 789 PFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGVIDTACKTSETG 848
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+QRRLMKAMED+ V YD+TVR
Sbjct 849 YVQRRLMKAMEDIMVHYDKTVR 870
> cpv:cgd3_2620 DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat ; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1902
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/143 (79%), Positives = 125/143 (87%), Gaps = 1/143 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDES-NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKR 59
A+VN+ELN+ARE S +A+E LD S NNI+AMV GSKGS INISQIMACVGQQNVEGKR
Sbjct 750 AQVNQELNSARELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKR 809
Query 60 IPSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSET 119
IP GF +RSLPHF K+DY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSET
Sbjct 810 IPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSET 869
Query 120 GYIQRRLMKAMEDVKVSYDRTVR 142
GYIQRRL+KAMED V YDRTVR
Sbjct 870 GYIQRRLIKAMEDCMVQYDRTVR 892
> tpv:TP03_0185 DNA-directed RNA polymerase II largest subunit
(EC:2.7.7.6); K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1681
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
ARVNKELN ARE+S + + L+ SNNI++MV +GSKGS INISQI+ACVGQQNVEGKRI
Sbjct 729 ARVNKELNDAREQSGSIVASSLNLSNNILSMVNSGSKGSTINISQIIACVGQQNVEGKRI 788
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF +RSLPHF K DY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSETG
Sbjct 789 PFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETG 848
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+QRRL+KAMEDV V YDRT R
Sbjct 849 YVQRRLIKAMEDVMVQYDRTAR 870
> pfa:PFC0805w DNA-directed RNA polymerase II, putative; K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=2457
Score = 228 bits (580), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 116/142 (81%), Positives = 126/142 (88%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
RVN ELN ARE + KVASE LDE NNI +MV +GSKGSIINISQI++CVGQQNVEGKRI
Sbjct 872 TRVNNELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRI 931
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GFN+RSLPHF KFDY PESRGFV +SYL+GL PQE+FFHAMGGREGIIDTACKTSETG
Sbjct 932 PFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETG 991
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
YIQRRL+KAMEDV V YDRTVR
Sbjct 992 YIQRRLIKAMEDVMVQYDRTVR 1013
> ath:AT4G35800 NRPB1; NRPB1 (RNA POLYMERASE II LARGE SUBUNIT);
DNA binding / DNA-directed RNA polymerase; K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1840
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 103/141 (73%), Positives = 117/141 (82%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
RVN+ LN AR+ + A + L E+NN+ AMV AGSKGS INISQ+ ACVGQQNVEGKRIP
Sbjct 737 RVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 796
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
GF+ R+LPHF+K DY PESRGFVE+SYL GL PQE FFHAMGGREG+IDTA KTSETGY
Sbjct 797 FGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 856
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
IQRRL+KAMED+ V YD TVR
Sbjct 857 IQRRLVKAMEDIMVKYDGTVR 877
> cel:F36A4.7 ama-1; AMAnitin resistant family member (ama-1);
K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1852
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 116/141 (82%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+VN+ LN AR+++ A + L E NN +MV++GSKGS INISQ++ACVGQQNVEGKRIP
Sbjct 730 KVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIP 789
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
GF +R+LPHF K DY PES+GFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGY
Sbjct 790 FGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 849
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
IQRRL+KAME V V+YD TVR
Sbjct 850 IQRRLIKAMESVMVNYDGTVR 870
> dre:553347 polr2a, im:7136071; polymerase (RNA) II (DNA directed)
polypeptide A; K03006 DNA-directed RNA polymerase II subunit
RPB1 [EC:2.7.7.6]
Length=1972
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/141 (69%), Positives = 114/141 (80%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+VN+ LN AR+K+ A + L E NN +MV+AGSKGS INISQ++A VGQQNVEGKRIP
Sbjct 737 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIP 796
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
GF +R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGY
Sbjct 797 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 856
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
IQRRL+K+ME V V YD TVR
Sbjct 857 IQRRLIKSMESVMVKYDATVR 877
> mmu:20020 Polr2a, 220kDa, Rpb1, Rpo2-1; polymerase (RNA) II
(DNA directed) polypeptide A (EC:2.7.7.6); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1932
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 114/141 (80%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+VN+ LN AR+K+ A + L E NN +MV++G+KGS INISQ++A VGQQNVEGKRIP
Sbjct 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
GF +R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGY
Sbjct 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
IQRRL+K+ME V V YD TVR
Sbjct 860 IQRRLIKSMESVMVKYDATVR 880
> hsa:5430 POLR2A, MGC75453, POLR2, POLRA, RPB1, RPBh1, RPO2,
RPOL2, RpIILS, hRPB220, hsRPB1; polymerase (RNA) II (DNA directed)
polypeptide A, 220kDa (EC:2.7.7.6 2.7.7.48); K03006 DNA-directed
RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1970
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 114/141 (80%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+VN+ LN AR+K+ A + L E NN +MV++G+KGS INISQ++A VGQQNVEGKRIP
Sbjct 740 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
GF +R+LPHF K DY PESRGFVE+SYL GL P E FFHAMGGREG+IDTA KT+ETGY
Sbjct 800 FGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGY 859
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
IQRRL+K+ME V V YD TVR
Sbjct 860 IQRRLIKSMESVMVKYDATVR 880
> sce:YDL140C RPO21, RPB1, RPB220, SUA8; B220 (EC:2.7.7.6); K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Length=1733
Score = 201 bits (510), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 112/136 (82%), Gaps = 0/136 (0%)
Query 7 LNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNN 66
LN AR+K+ ++A L + NN+ MV+AGSKGS INI+Q+ ACVGQQ+VEGKRI GF +
Sbjct 722 LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVD 781
Query 67 RSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 126
R+LPHFSK DY PES+GFVE+SYL GL PQE FFHAMGGREG+IDTA KT+ETGYIQRRL
Sbjct 782 RTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 841
Query 127 MKAMEDVKVSYDRTVR 142
+KA+ED+ V YD T R
Sbjct 842 VKALEDIMVHYDNTTR 857
> hsa:11128 POLR3A, RPC1, RPC155, hRPC155; polymerase (RNA) III
(DNA directed) polypeptide A, 155kDa (EC:2.7.7.6); K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1390
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 103/142 (72%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
A + KEL+ R+ + +LD+SN+ + M L GSKGS INISQ++ACVGQQ + G R+
Sbjct 750 ALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRV 809
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF NRSLPHF K P ++GFV +S+ +GL P E FFH M GREG++DTA KT+ETG
Sbjct 810 PDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETG 869
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+QRRL+K++ED+ YD TVR
Sbjct 870 YMQRRLVKSLEDLCSQYDLTVR 891
> mmu:218832 Polr3a, 9330175N20Rik, BC053071, MGC62420, RPC1,
RPC155; polymerase (RNA) III (DNA directed) polypeptide A (EC:2.7.7.6);
K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1390
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 103/142 (72%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
A + KEL+ R+ + +LD+SN+ + M L GSKGS INISQ++ACVGQQ + G R+
Sbjct 750 ALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRV 809
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF NRSLPHF K P ++GFV +S+ +GL P E FFH M GREG++DTA KT+ETG
Sbjct 810 PDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETG 869
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+QRRL+K++ED+ YD TVR
Sbjct 870 YMQRRLVKSLEDLCSQYDLTVR 891
> dre:100334143 polymerase (RNA) III (DNA directed) polypeptide
A, 155kDa-like; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=673
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 102/142 (71%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
A + KEL+ R+ + +LD+SN+ + M L GSKGS INISQ++ACVGQQ + G R+
Sbjct 137 ALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRV 196
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF NRSLPHF K P ++GFV S+ +GL P E FFH M GREG++DTA KT+ETG
Sbjct 197 PDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETG 256
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+QRRL+K++ED+ YD TVR
Sbjct 257 YMQRRLVKSLEDLCSQYDLTVR 278
> cel:C42D4.8 rpc-1; RNA Polymerase, Class III (C) family member
(rpc-1); K03018 DNA-directed RNA polymerase III subunit RPC1
[EC:2.7.7.6]
Length=1400
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 99/138 (71%), Gaps = 0/138 (0%)
Query 5 KELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGF 64
+EL+ R+ + +V L + N + M + GSKGS INISQ++ACVGQQ + G R P GF
Sbjct 750 RELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGF 809
Query 65 NNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQR 124
RSLPHF + PE++GFV +S+ +GL P E FFH MGGREG++DTA KT+ETGY+QR
Sbjct 810 EERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQR 869
Query 125 RLMKAMEDVKVSYDRTVR 142
RL+K +ED+ SYD TVR
Sbjct 870 RLVKCLEDLCASYDGTVR 887
> tpv:TP04_0648 DNA-directed RNA polymerase III largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1617
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+V L+ R +S K+ + L+ N + M +G+KG++INI+Q++ACVGQQNV G+RI
Sbjct 830 QVKSILDELRNESGKICTSLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQ 889
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
+GF R+LPHF+ +SRGFV +S+ TGL P+E FFH M GREG+IDTA KTSETGY
Sbjct 890 NGFIGRTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGY 949
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
+QRRLMK MED+ V YD +VR
Sbjct 950 MQRRLMKVMEDLSVCYDYSVR 970
> cpv:cgd6_3290 DNA-directed RNA polymerase III C1 subunit ; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+V K L+ R ++ K + L SN + M L+G+KG +INI+Q++ACVGQQNV G+RI
Sbjct 747 KVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQ 806
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
+GF NR+LPHF SRGFV +S+ +GL P E FFH M GREG++DTA KT+ETGY
Sbjct 807 NGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTMSGREGLVDTAVKTAETGY 866
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
+QRRL+KA+ED+ + YD+TVR
Sbjct 867 MQRRLVKALEDLCIKYDQTVR 887
> ath:AT5G60040 NRPC1; NRPC1; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding / zinc ion binding; K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1376
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 95/142 (66%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
A + LN RE + K L N+ + M GSKGS INISQ++ACVGQQ V G R
Sbjct 751 AEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRA 810
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF +RSLPHF + P ++GFV +S+ +GL E FFH MGGREG++DTA KT+ TG
Sbjct 811 PDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTG 870
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+ RRLMKA+ED+ V YD TVR
Sbjct 871 YMSRRLMKALEDLLVHYDNTVR 892
> sce:YOR116C RPO31, RPC1, RPC160; C160 (EC:2.7.7.6); K03018 DNA-directed
RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1460
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 0/142 (0%)
Query 1 ARVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRI 60
A++ L+ RE+ V +LD N + M GSKGS +N+SQ++A VGQQ + G R+
Sbjct 764 AKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRV 823
Query 61 PSGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETG 120
P GF +RSLPHF K P+S+GFV +S+ +GL P E FHA+ GREG++DTA KT+ETG
Sbjct 824 PDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETG 883
Query 121 YIQRRLMKAMEDVKVSYDRTVR 142
Y+ RRLMK++ED+ YD TVR
Sbjct 884 YMSRRLMKSLEDLSCQYDNTVR 905
> pfa:PF13_0150 DNA-directed RNA polymerase 3 largest subunit
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=2356
Score = 159 bits (401), Expect = 4e-39, Method: Composition-based stats.
Identities = 75/141 (53%), Positives = 102/141 (72%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+V L+ R + K ++ L N + M +G+KG++INI+Q++ACVGQQNV G+RI
Sbjct 862 KVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQ 921
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
+GF NR+LPHF ESRGFV++S+ TGL P E FFH M GREG++DTA KT+ETGY
Sbjct 922 NGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGY 981
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
+QRRLMKA+ED+ + YD +VR
Sbjct 982 MQRRLMKALEDLSIHYDYSVR 1002
> tgo:TGME49_106290 DNA-directed RNA polymerase III largest subunit,
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase
III subunit RPC1 [EC:2.7.7.6]
Length=1746
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 100/141 (70%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
RV L+ R ++ K + L N + M +G+KG++INI+Q++ACVGQQNV G+RI
Sbjct 826 RVKSILDDLRNEAGKACNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQ 885
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
+GF +R+LPHF +SRGFV S+ +GL P E FFH M GREG++DTA KT+ETGY
Sbjct 886 NGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHTMSGREGLVDTAVKTAETGY 945
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
+QRRLMKA+ED+ + YD +VR
Sbjct 946 MQRRLMKALEDLSIRYDNSVR 966
> bbo:BBOV_III007400 17.m07648; RNA polymerase Rpb1, domain containing
protein; K03018 DNA-directed RNA polymerase III subunit
RPC1 [EC:2.7.7.6]
Length=1541
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 100/141 (70%), Gaps = 0/141 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIP 61
+V + L+ R ++ K + L N + M +G+KG++INI+Q++A VGQQNV G+RI
Sbjct 803 QVKRVLDELRNEAGKACNSNLRADNKPLIMFNSGAKGALINIAQMVALVGQQNVSGQRIE 862
Query 62 SGFNNRSLPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGY 121
+GF R+LPHF +SRGFV +S+ +GL P+E FFH M GREG+IDTA KTSETGY
Sbjct 863 NGFIGRTLPHFDIGCMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGY 922
Query 122 IQRRLMKAMEDVKVSYDRTVR 142
+QRRLMKA+E + V YD TVR
Sbjct 923 MQRRLMKALEVLAVCYDHTVR 943
> ath:AT3G57660 NRPA1; NRPA1; DNA binding / DNA-directed RNA polymerase/
zinc ion binding; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1670
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 85/117 (72%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N I M ++G+KGS +N QI + +GQQ++EGKR+P + ++LP F +D+ P + GF+
Sbjct 936 NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+L+GL PQE +FH M GREG++DTA KTS +GY+QR LMK +E +KV+YD TVR
Sbjct 996 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVR 1052
> cel:Y48E1A.1 hypothetical protein; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1737
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 81/117 (69%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N + M+ +G+KGS +N QI C+GQ +EGKR+ R+LP F FD P + G++
Sbjct 928 NALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYI 987
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+ +LTG+ PQELFFH M GREG+IDTA KTS +GY+QR ++K +E ++V YD TVR
Sbjct 988 DQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVR 1044
> sce:YOR341W RPA190, RRN1; A190 (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1664
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 84/117 (71%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N++ AM L+G+KGS +N+SQIM +GQQ +EG+R+P + ++LP F ++ + G+V
Sbjct 923 NSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYV 982
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+ + +G+ PQE +FH M GREG+IDTA KTS +GY+QR L K +E V VSYD ++R
Sbjct 983 KGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIR 1039
> xla:398274 polr1a; polymerase (RNA) I polypeptide A, 194kDa;
K02999 DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1730
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
NN+ MV +G+KGS +N QI +GQ +EG+R P + RSLP F +D+ P S GFV
Sbjct 897 NNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGRSLPCFQPYDFSPRSGGFV 956
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTG+ P E FFH M GREG++DTA KTS +GY+QR ++K +E + V YD TVR
Sbjct 957 TGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVR 1013
> bbo:BBOV_IV009600 23.m06317; DNA directed RNA polymerase (EC:2.7.7.6);
K02999 DNA-directed RNA polymerase I subunit RPA1
[EC:2.7.7.6]
Length=2016
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 81/117 (69%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N +MVL G+KGS +N S I + + QQ++EG+R+P + R+LP F+ D + GF+
Sbjct 1200 NGFASMVLTGAKGSKVNFSMICSILAQQSLEGRRVPVMPSVRTLPSFAFGDLGARAGGFI 1259
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTGL PQE FFH M GREG++DT KT+++GY+QR ++KAMEDV YD TVR
Sbjct 1260 TDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCILKAMEDVICCYDATVR 1316
> tpv:TP01_0809 RNA polymerase large subunit; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1996
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N MV G+KGS +N + I + QQ +EGKR+P + R+LP F+ D+ + GF+
Sbjct 1179 NGFATMVSTGAKGSKVNFAMISCALSQQTLEGKRVPVMPSVRTLPCFAFGDFGSRAGGFI 1238
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTGL PQE FFH M GREG++DT KT+++GY+QR ++KAMEDV V YD TVR
Sbjct 1239 SDRFLTGLRPQEYFFHCMSGREGLVDTCVKTAKSGYLQRCVLKAMEDVIVCYDSTVR 1295
> mmu:20019 Polr1a, 194kDa, 3010014K16Rik, RPA194, Rpo1-4, mRPA1;
polymerase (RNA) I polypeptide A (EC:2.7.7.6); K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1717
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
NN+ MV +G+KGS +N QI +GQ +EG+R P + +SLP F +++ P + GFV
Sbjct 899 NNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFV 958
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTG+ P E FFH M GREG++DTA KTS +GY+QR ++K +E + + YD TVR
Sbjct 959 TGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVR 1015
> pfa:PFE0465c RNA polymerase I; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=2914
Score = 122 bits (305), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 0/118 (0%)
Query 25 SNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGF 84
+N M+ G+KGS +N S I + QQ +EGKR+P + ++LP F ++DY S G
Sbjct 1807 NNGFSNMIFTGAKGSKVNYSMICGMLDQQYLEGKRVPRMRSGKTLPSFHRYDYGARSCGL 1866
Query 85 VEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+ +L GL PQE FFH M GREG+IDTA KT+++GYIQR L+K ME V + YD TVR
Sbjct 1867 ITDCFLEGLRPQEYFFHCMSGREGLIDTAVKTAKSGYIQRCLIKCMESVILHYDGTVR 1924
> tgo:TGME49_044880 DNA-directed RNA polymerase I largest subunit,
putative (EC:2.7.7.49 2.7.7.6); K02999 DNA-directed RNA
polymerase I subunit RPA1 [EC:2.7.7.6]
Length=2768
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 82/117 (70%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N +M+ +GSKGS +N + I +GQQ++EG+R+ ++RSLP F FD+ +RGF+
Sbjct 1649 NGFASMIKSGSKGSNVNFAMISVFLGQQSLEGQRVKFMTSDRSLPAFLPFDFGSRARGFI 1708
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
S+L+GL +E FFH M GREG++DTA KT+++GY+QR + K +E + V YD +VR
Sbjct 1709 TSSFLSGLKEEEYFFHCMAGREGLVDTAVKTAKSGYLQRSVTKGLEALTVRYDGSVR 1765
> hsa:25885 POLR1A, A190, DKFZp586M0122, FLJ21915, MGC87965, RPA1,
RPA194, RPO1-4, RPO14; polymerase (RNA) I polypeptide A,
194kDa (EC:2.7.7.6); K02999 DNA-directed RNA polymerase I
subunit RPA1 [EC:2.7.7.6]
Length=1720
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N++ MV +G+KGS +N QI +GQ +EG+R P + +SLP F +++ P + GFV
Sbjct 892 NSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFV 951
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTG+ P E FFH M GREG++DTA KTS +GY+QR ++K +E + V YD TVR
Sbjct 952 TGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVR 1008
> dre:327078 polr1a, cb934, fa26a03, sb:cb935, wu:fa26a03; polymerase
(RNA) I polypeptide A; K02999 DNA-directed RNA polymerase
I subunit RPA1 [EC:2.7.7.6]
Length=1693
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
NN+ MV +G+KGS +N QI +GQ +EG+R P + +SLP F ++ P S GFV
Sbjct 885 NNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFV 944
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
+LTG+ P E FFH M GREG++DTA KTS +GY+QR ++K +E + V YD TVR
Sbjct 945 TGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVR 1001
> cpv:cgd5_730 DNA-directed RNA polymerase I ; K02999 DNA-directed
RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Length=1805
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 78/117 (66%), Gaps = 0/117 (0%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N +MVL G+KGS +N + I +GQQ +EG+R+P + ++LP F+ +D + G +
Sbjct 1248 NGFSSMVLTGAKGSRVNYNMICVMLGQQELEGRRVPIMPSMKTLPSFATYDLGSRAGGLI 1307
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
YL GL QE FFH M GREG++DTA KT+ +GY+QR ++K +E + V+YD TVR
Sbjct 1308 TDRYLDGLHAQEFFFHCMSGREGLVDTAVKTARSGYLQRCILKGLESMIVNYDGTVR 1364
> ath:AT1G63020 NRPD1A; NRPD1A (NUCLEAR RNA POLYMERASE D 1A);
DNA binding / DNA-directed RNA polymerase
Length=1453
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query 23 DESNNIMAMVLAGSKGSIINISQIMACVGQQN--------VEGKRIPSGFNNRSLP---- 70
D+SN+ + M AGSKG+I + Q C+G QN + + +N+ + P
Sbjct 720 DQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAWNDPNSPLRGA 779
Query 71 ----HFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRL 126
+ Y P G +E+S+LTGL P E F H++ R+ + G + RRL
Sbjct 780 KGKDSTTTESYVP--YGVIENSFLTGLNPLESFVHSVTSRDSSF--SGNADLPGTLSRRL 835
Query 127 MKAMEDVKVSYDRTVR 142
M M D+ +YD TVR
Sbjct 836 MFFMRDIYAAYDGTVR 851
> dre:100334761 DNA-directed RNA polymerase II A-like
Length=780
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 0/44 (0%)
Query 2 RVNKELNAAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQ 45
+VN+ LN AR+K+ A + L E NN +MV+AGSKGS INISQ
Sbjct 737 QVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQ 780
> tgo:TGME49_100690 RNA polymerase Rpb1, domain 5 family protein
(EC:2.7.7.6)
Length=357
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query 80 ESRGF-----VEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVK 134
+RGF V S+ GL E F G R+GI+DT+ KT+ GY+ RRL++++++V
Sbjct 2 NARGFLFKIPVMQSFNKGLKAYEYFISCYGARKGILDTSLKTANAGYLTRRLVESIQEVV 61
Query 135 V 135
+
Sbjct 62 I 62
> ath:ArthCp012 rpoC2; RNA polymerase beta'' chain; K03046 DNA-directed
RNA polymerase subunit beta' [EC:2.7.7.6]
Length=1376
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 20/113 (17%)
Query 23 DESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESR 82
D N + M +G++G N SQ+ VG + + S P D P
Sbjct 123 DPFNPVHMMSFSGARG---NASQVHQLVGMRGL-----------MSDPQGQMIDLP---- 164
Query 83 GFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 135
++ + GL E G R+G++DTA +TS+ GY+ RRL++ ++ + V
Sbjct 165 --IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVV 215
> eco:b3988 rpoC, ECK3979, JW3951, tabB; RNA polymerase, beta
prime subunit (EC:2.7.7.6); K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=1407
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRSLPHFSKFDYPPESRGFV 85
N+I M +G++GS I Q+ G + + K P S + P +
Sbjct 720 NSIYMMADSGARGSAAQIRQL---AGMRGLMAK-----------PDGSIIETP------I 759
Query 86 EHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKVSYD 138
++ GL + F G R+G+ DTA KT+ +GY+ RRL+ +D+ V+ D
Sbjct 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812
> bbo:BBOV_V000110 rpoC2-N-terminal; K03046 DNA-directed RNA polymerase
subunit beta' [EC:2.7.7.6]
Length=355
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 0/44 (0%)
Query 92 GLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 135
GL ++ + + R IID++ T+E+GY+ RRL++++ +V +
Sbjct 123 GLNLKDFIYSSFSARNSIIDSSLNTAESGYLTRRLIESLRNVYI 166
> tpv:TP05_0042 DNA-directed RNA polymerase subunit beta'' (EC:2.7.7.6);
K03046 DNA-directed RNA polymerase subunit beta'
[EC:2.7.7.6]
Length=363
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 0/54 (0%)
Query 82 RGFVEHSYLTGLLPQELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVKV 135
+G++ + G ++ + RE IID++ +GY+ R+L++ + D+ +
Sbjct 116 KGYISSNLNYGFTFKDFILSSFKARESIIDSSVNIYSSGYLTRKLVEGLRDMNI 169
> mmu:72047 Ddx42, 1810047H21Rik, AW319508, AW556242, B430002H05Rik,
RHELP, RNAHP, SF3b125; DEAD (Asp-Glu-Ala-Asp) box polypeptide
42 (EC:3.6.4.13); K12835 ATP-dependent RNA helicase
DDX42 [EC:3.6.4.13]
Length=929
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query 73 SKFDYPPESRGFV-EHSYLTGLLPQELF 99
S+ DYPP + F EH +T L PQ+L
Sbjct 206 SEIDYPPFEKNFYNEHEEITNLTPQQLI 233
> ath:AT3G16370 GDSL-motif lipase/hydrolase family protein
Length=353
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 0/23 (0%)
Query 65 NNRSLPHFSKFDYPPESRGFVEH 87
NN LP + DYPP R F H
Sbjct 43 NNNYLPTLFRADYPPYGRDFANH 65
> hsa:11325 DDX42, FLJ43179, RHELP, RNAHP, SF3b125; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 42 (EC:3.6.4.13); K12835 ATP-dependent
RNA helicase DDX42 [EC:3.6.4.13]
Length=938
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query 73 SKFDYPPESRGFV-EHSYLTGLLPQELF 99
S+ DYPP + F EH +T L PQ+L
Sbjct 206 SEIDYPPFEKNFYNEHEEITNLTPQQLI 233
> tgo:TGME49_075320 penicillin amidase domain-containing protein
(EC:3.5.1.11)
Length=1139
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query 9 AAREKSAKVASEQLDESNNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNRS 68
AAR A ++L+ + + +V G + I I A ++ G + G RS
Sbjct 549 AARAHPAINFGDKLNSAKDWRDLVALGRENEQIEFVTIWAT--REGDIGASLTGGVPARS 606
Query 69 LPHFSKFDYPPESRGFVEHSYLTGLLPQELFFHAMGGREGIIDTA 113
LP D+ S+ + G++P E H M +G I TA
Sbjct 607 LPPDGGGDFRDGSKSSAD---WNGVVPTEALPHVMNPPQGFIATA 648
> cel:ZK370.2 sma-2; SMAll family member (sma-2)
Length=418
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query 26 NNIMAMVLAGSKGSIINISQIMACVGQQNVEGKRIPSGFNNR-------SLPH 71
+N+M ++ +K ++ N+ + C GQQ E IP + R +LPH
Sbjct 31 DNLMKKLIKHNKQALENLEFALRCQGQQKTECVTIPRSLDGRLQISHRKALPH 83
> xla:431953 ccdc149, MGC83813; coiled-coil domain containing
149
Length=516
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query 94 LPQELFFHAMGGREG-IIDTACKTSETGYIQRRLMKAMEDVKVSYDRTVR 142
L QEL H +GG E IID E Y+Q RL + E+V + V+
Sbjct 140 LNQELN-HVLGGHEKRIIDIDALCMENRYLQERLKQVQEEVNLQKSNLVK 188
Lambda K H
0.318 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2807590228
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40