bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_1589_orf2
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
xla:399344 ssrp1; structure specific recognition protein 1; K0... 71.2 7e-13
hsa:3148 HMGB2, HMG2; high-mobility group box 2; K11295 high m... 68.9 3e-12
dre:100332676 high-mobility group box 2-like 68.2 5e-12
dre:447936 hmgb2l, hmgb2, im:6909096, wu:fa20b02, zgc:101854; ... 68.2 5e-12
dre:449949 ssrp1b, im:7140964; structure specific recognition ... 67.0 1e-11
mmu:97165 Hmgb2, C80539, HMG-2, Hmg2, MGC103184; high mobility... 66.6 2e-11
xla:379263 MGC52578; HMG-X protein; K11295 high mobility group... 66.6 2e-11
mmu:20833 Ssrp1, C81323, Hmg1-rs1, Hmgi-rs3, Hmgox, T160; stru... 66.2 2e-11
xla:379074 hmgb2, MGC130846, MGC52825; high mobility group box... 66.2 2e-11
hsa:6749 SSRP1, FACT, FACT80, T160; structure specific recogni... 66.2 2e-11
xla:734200 hmgb3, Xhmgb3; high mobility group box 3; K11296 hi... 65.9 3e-11
dre:641484 hmgb2, MGC123215, wu:fb22b10, wu:fc95d12, zgc:12321... 65.5 4e-11
hsa:3149 HMGB3, HMG2A, HMG4, MGC90319; high-mobility group box... 65.1 5e-11
mmu:15354 Hmgb3, Hmg2a, Hmg4; high mobility group box 3; K1129... 64.7 7e-11
hsa:646993 HMGB3P24; high-mobility group box 3 pseudogene 24; ... 63.9 1e-10
xla:380277 hmgb3, MGC54022; high mobility group box 3; K11296 ... 63.2 2e-10
xla:380530 hmgb1, HMG1, MGC64255, hmg-1, hmg3, sbp-1; high mob... 62.0 4e-10
xla:398054 hmg-1; high mobility group protein-1; K10802 high m... 61.6 5e-10
hsa:441795 HMGB3P27; high-mobility group box 3 pseudogene 27; ... 60.1 1e-09
hsa:100508670 putative high mobility group protein B3-like pro... 60.1 1e-09
cel:Y48B6A.14 hmg-1.1; HMG family member (hmg-1.1) 59.7 2e-09
hsa:729595 HMGB3P22; high-mobility group box 3 pseudogene 22; ... 59.3 3e-09
hsa:100508832 hypothetical protein LOC100508832 58.5 5e-09
hsa:100506595 HMGB1P40; high-mobility group box 1 pseudogene 40 58.2
mmu:15289 Hmgb1, DEF, HMG-1, Hmg1, MGC103168, MGC103169, MGC11... 58.2 7e-09
hsa:3146 HMGB1, DKFZp686A04236, HMG1, HMG3, SBP-1; high-mobili... 58.2 7e-09
mmu:637733 high mobility group protein B1-like; K10802 high mo... 57.8 8e-09
hsa:645490 similar to hCG1991922; K10802 high mobility group p... 57.4 1e-08
cel:C32F10.5 hmg-3; HMG family member (hmg-3); K09272 structur... 57.0 1e-08
dre:550466 hmgb3b, fa19b06, fj43d02, hmgb3, wu:fa19b06, wu:fj4... 56.2 2e-08
dre:321622 hmgb1, fb23c02, ik:tdsubc_1a5, wu:fb23c02, xx:tdsub... 56.2 3e-08
dre:561025 hmgb3a, wu:fb17a03, wu:fk52f12, zgc:162415; high-mo... 55.8 3e-08
mmu:667284 Gm8556, EG667284; predicted gene 8556 53.9
mmu:619937 Gm6115, EG619937; predicted gene 6115; K10802 high ... 50.4 1e-06
ath:AT1G20693 HMGB2; HMGB2 (HIGH MOBILITY GROUP B 2); DNA bind... 49.7 2e-06
ath:AT3G51880 HMGB1; HMGB1 (HIGH MOBILITY GROUP B 1); DNA bind... 49.7 3e-06
ath:AT2G34450 high mobility group (HMG1/2) family protein 48.9 3e-06
dre:795095 MGC165618, fb13a05, wu:fb13a05; zgc:165618; K10802 ... 48.1 6e-06
cpv:cgd8_4220 hypothetical protein 48.1 7e-06
tgo:TGME49_010410 high mobility group protein 47.8 8e-06
hsa:644129 hypothetical protein LOC644129 47.8 9e-06
dre:553572 hmg20b, MGC110001, fc85b02, si:dkey-110c1.6, wu:fc8... 45.8 4e-05
cpv:cgd2_3070 high mobility group (HMG)-box 45.4 4e-05
xla:779314 hmg20b, MGC154833; high mobility group 20B 45.1 6e-05
ath:AT4G23800 high mobility group (HMG1/2) family protein 45.1 6e-05
xla:399067 hypothetical protein MGC68625 45.1 6e-05
sce:YMR072W ABF2; Abf2p 44.7 8e-05
ath:AT2G17560 HMGB4; HMGB4 (HIGH MOBILITY GROUP B 4); DNA bind... 44.3 1e-04
hsa:127540 HMGB4, FLJ40388, MGC88128, dJ1007G16.5; high-mobili... 43.9 1e-04
hsa:10362 HMG20B, BRAF25, BRAF35, FLJ26127, HMGX2, HMGXB2, PP7... 43.9 1e-04
> xla:399344 ssrp1; structure specific recognition protein 1;
K09272 structure-specific recognition protein 1
Length=693
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM-KD-KSKWEELAAKAKKNY 58
KRP +AY L++N RE++K +NPG S+T+ +KKAGE WK M +D K +W+ A +AK++Y
Sbjct 542 KRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKNMSRDKKEEWDRRAEEAKRDY 601
Query 59 EKEMVEYKASG 69
EK M EY S
Sbjct 602 EKAMKEYNTSA 612
> hsa:3148 HMGB2, HMG2; high-mobility group box 2; K11295 high
mobility group protein B2
Length=209
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +E+R ++K ++PG S+ + AKK GE W E KDK +E+ AAK K+ Y
Sbjct 96 KRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKY 155
Query 59 EKEMVEYKASG----GGGGSDKKKSSSKKSE 85
EK++ Y+A G G G + S KK+E
Sbjct 156 EKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE 186
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV EF+KK E WK M K+KSK+E++A K Y++
Sbjct 14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDR 73
Query 61 EMVEY 65
EM Y
Sbjct 74 EMKNY 78
> dre:100332676 high-mobility group box 2-like
Length=214
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETW--KEMKDKSKWEELAAKAKKNY 58
KRP +A+F+F +EYR +K ++P ++ E AKK GE W + KD++ +E+ A K ++ Y
Sbjct 98 KRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKY 157
Query 59 EKEMVEYKASGGGG--GSDKKKSSSKKSE 85
EKE+ Y+A GG G + S KKS+
Sbjct 158 EKEVAAYRAGGGASKRGPGRPTGSVKKSQ 186
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEMK--DKSKWEELAAKAKKNYEK 60
+AY F+ R+E K+K+P V +EF+KK E WK + DK K+E++A K Y++
Sbjct 14 SAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDR 73
Query 61 EMVEYKASGGGGGSDKKK 78
EM Y G G + +KK
Sbjct 74 EMKTYVPPKGVGKTGRKK 91
> dre:447936 hmgb2l, hmgb2, im:6909096, wu:fa20b02, zgc:101854;
high-mobility group box 2, like; K11295 high mobility group
protein B2
Length=214
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETW--KEMKDKSKWEELAAKAKKNY 58
KRP +A+F+F +EYR +K ++P ++ E AKK GE W + KD++ +E+ A K ++ Y
Sbjct 98 KRPPSAFFVFCSEYRPTVKSEHPNLTIGEIAKKLGELWSKQSSKDRAPFEQKAGKLREKY 157
Query 59 EKEMVEYKASGGGG--GSDKKKSSSKKSE 85
EKE+ Y+A GG G + S KKS+
Sbjct 158 EKEVAAYRAGGGASKRGPGRPTGSVKKSQ 186
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEMK--DKSKWEELAAKAKKNYEK 60
+AY F+ R+E K+K+P V +EF+KK E WK + DK K+E++A K Y++
Sbjct 14 SAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKADKVRYDR 73
Query 61 EMVEYKASGGGGGSDKKK 78
EM Y G G + +KK
Sbjct 74 EMKTYVPPKGVGKTGRKK 91
> dre:449949 ssrp1b, im:7140964; structure specific recognition
protein 1b; K09272 structure-specific recognition protein
1
Length=706
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM-KD-KSKWEELAAKAKKNY 58
KRP +AY L++N R+ +K +NPG S+TE +KKAGE WK++ KD K +W+ A +AKK Y
Sbjct 547 KRPMSAYMLWLNSSRDRIKSENPGISITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEY 606
Query 59 EKEMVEYK 66
++ M EY+
Sbjct 607 DRAMREYR 614
> mmu:97165 Hmgb2, C80539, HMG-2, Hmg2, MGC103184; high mobility
group box 2; K11295 high mobility group protein B2
Length=210
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +E R ++K ++PG S+ + AKK GE W E KDK +E+ AAK K+ Y
Sbjct 96 KRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKY 155
Query 59 EKEMVEYKASG----GGGGSDKKKSSSKKSE 85
EK++ Y+A G G G + S KK+E
Sbjct 156 EKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE 186
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV EF+KK E WK M K+KSK+E+LA K Y++
Sbjct 14 SSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDR 73
Query 61 EMVEY 65
EM Y
Sbjct 74 EMKNY 78
> xla:379263 MGC52578; HMG-X protein; K11295 high mobility group
protein B2
Length=212
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+F+F +E+R ++K + PG S+ + AKK GE W E KDK E+ AAK K+ Y
Sbjct 97 KRPPSAFFIFCSEHRPQIKSETPGLSIGDTAKKLGELWAEQTPKDKLPHEQKAAKLKEKY 156
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 157 EKDVAAYRAKG 167
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV ++F+KK E WK M K+K K+E+LA K YE+
Sbjct 14 SSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFEDLAKGDKARYER 73
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 74 EMKTYIPPKG 83
> mmu:20833 Ssrp1, C81323, Hmg1-rs1, Hmgi-rs3, Hmgox, T160; structure
specific recognition protein 1; K09272 structure-specific
recognition protein 1
Length=708
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +AY L++N RE++K +PG S+T+ +KKAGE WK M + K +W+ A A++ Y
Sbjct 548 KRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREY 607
Query 59 EKEMVEYKASGGGGGS 74
EK M EY+ GG G S
Sbjct 608 EKAMKEYE--GGRGDS 621
> xla:379074 hmgb2, MGC130846, MGC52825; high mobility group box
2; K11295 high mobility group protein B2
Length=211
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +E R ++K + PG S+ + AKK GE W E KDK +E+ AAK K+ Y
Sbjct 97 KRPPSAFFLFCSEQRPQIKSETPGLSIGDTAKKLGERWSEQTSKDKLPFEQKAAKLKEKY 156
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 157 EKDVAAYRAKG 167
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV EF+KK E WK M K+K K+E++A K YE+
Sbjct 14 SSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKGKFEDMAKGDKVRYER 73
Query 61 EMVEY 65
EM Y
Sbjct 74 EMKTY 78
> hsa:6749 SSRP1, FACT, FACT80, T160; structure specific recognition
protein 1; K09272 structure-specific recognition protein
1
Length=709
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +AY L++N RE++K +PG S+T+ +KKAGE WK M + K +W+ A A+++Y
Sbjct 548 KRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDY 607
Query 59 EKEMVEYKASGG 70
EK M EY+ G
Sbjct 608 EKAMKEYEGGRG 619
> xla:734200 hmgb3, Xhmgb3; high mobility group box 3; K11296
high mobility group protein B3
Length=201
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
KRP + +FLF +E+R ++K NPG S+ + AKK GE W + D K + AAK K+ Y
Sbjct 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDIAKKLGEMWNNLSDGEKQPYNNKAAKLKEKY 153
Query 59 EKEMVEYKASGGGGGS 74
EK++ +YK+ G G+
Sbjct 154 EKDVADYKSKGKFDGA 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP V EF+KK E W+ M K+KSK+E+LA K Y++
Sbjct 14 SAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMSGKEKSKFEDLAKADKVRYDR 73
Query 61 EMVEY 65
EM ++
Sbjct 74 EMKDF 78
> dre:641484 hmgb2, MGC123215, wu:fb22b10, wu:fc95d12, zgc:123215;
high-mobility group box 2; K11295 high mobility group protein
B2
Length=213
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+F+F +++R ++K NPG S+ + AKK GE W ++ K+KS +E+ A K K+ Y
Sbjct 96 KRPPSAFFVFCSDHRPKVKGDNPGISIGDIAKKLGEMWSKLSPKEKSPYEQKAMKLKEKY 155
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 156 EKDVAAYRAKG 166
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKKNPG SV +EF+KK E W+ M K+K K+EE+A K Y++
Sbjct 13 SSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKGKFEEMAKTDKVRYDR 72
Query 61 EMVEY 65
EM Y
Sbjct 73 EMKNY 77
> hsa:3149 HMGB3, HMG2A, HMG4, MGC90319; high-mobility group box
3; K11296 high mobility group protein B3
Length=200
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEEL--AAKAKKNY 58
KRP + +FLF +E+R ++K NPG S+ + AKK GE W + D K + AAK K+ Y
Sbjct 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153
Query 59 EKEMVEYKASGGGGGS 74
EK++ +YK+ G G+
Sbjct 154 EKDVADYKSKGKFDGA 169
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP V EF+KK E WK M K+KSK++E+A K Y++
Sbjct 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query 61 EMVEY 65
EM +Y
Sbjct 74 EMKDY 78
> mmu:15354 Hmgb3, Hmg2a, Hmg4; high mobility group box 3; K11296
high mobility group protein B3
Length=200
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEEL--AAKAKKNY 58
KRP + +FLF +E+R ++K NPG S+ + AKK GE W + D K + AAK K+ Y
Sbjct 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKY 153
Query 59 EKEMVEYKASGGGGGS 74
EK++ +YK+ G G+
Sbjct 154 EKDVADYKSKGKFDGA 169
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP V EF+KK E WK M K+KSK++E+A K Y++
Sbjct 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query 61 EMVEY 65
EM +Y
Sbjct 74 EMKDY 78
> hsa:646993 HMGB3P24; high-mobility group box 3 pseudogene 24;
K11296 high mobility group protein B3
Length=208
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
KRP + +FLF +E+R ++K NPG S+ + AKK GE W + D K + AAK K+ Y
Sbjct 93 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKAAKLKEKY 152
Query 59 EKEMVEYKASG 69
EK++V+ K G
Sbjct 153 EKDVVDCKLKG 163
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query 1 KRPQ---TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAK 53
K+PQ +AY + +E KKKNP V EF+KK WK M K+K K+ E+A
Sbjct 7 KKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGEMAKA 66
Query 54 AKKNYEKEMVEYKASGGG 71
+ Y++EM +Y + GG
Sbjct 67 DEVCYDREMKDYGPAKGG 84
> xla:380277 hmgb3, MGC54022; high mobility group box 3; K11296
high mobility group protein B3
Length=202
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
KRP + +FLF +E+R ++K NPG ++ + AKK GE W + D K + AK K+ Y
Sbjct 94 KRPPSGFFLFCSEFRPKIKSTNPGITIGDVAKKLGEMWNNLSDSEKQPYNNKGAKLKEKY 153
Query 59 EKEMVEYKASGGGGGS 74
EK++ +YK+ G G+
Sbjct 154 EKDVADYKSKGKFDGA 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP V +EF+KK E W+ M K+KSK+++LA K Y++
Sbjct 14 SAYAYFVQTCREEHKKKNPEIPVNFSEFSKKCSERWRGMSGKEKSKFDDLAKADKVRYDR 73
Query 61 EMVEY 65
EM ++
Sbjct 74 EMQDF 78
> xla:380530 hmgb1, HMG1, MGC64255, hmg-1, hmg3, sbp-1; high mobility
group box 1; K10802 high mobility group protein B1
Length=211
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKE--MKDKSKWEELAAKAKKNY 58
KRP +A+FLF +E+R ++K ++PG ++ + AKK GE W DK +E AAK K+ Y
Sbjct 96 KRPPSAFFLFCSEFRPKIKGEHPGSTIGDIAKKLGEMWNNTATDDKLPFERKAAKLKEKY 155
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 156 EKDVAAYRAKG 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV EF+KK E WK M K+KSK+E++A K YE+
Sbjct 14 SSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKFEDMAKADKVRYER 73
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 74 EMKTYIPPKG 83
> xla:398054 hmg-1; high mobility group protein-1; K10802 high
mobility group protein B1
Length=210
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKE--MKDKSKWEELAAKAKKNY 58
KRP +A+FLF +++R ++K ++PG ++ + AKK GE W DK +E AAK K+ Y
Sbjct 95 KRPPSAFFLFCSDFRPKIKGEHPGSTIGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKY 154
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 155 EKDVAAYRAKG 165
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM-KDKSKWEELAAKAKKNYEKE 61
++Y F+ REE KKK+P SV EF+KK E WK M K+K+K+E++A K YE+E
Sbjct 14 SSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSKEKTKFEDMAKADKVRYERE 73
Query 62 MVEYKASGG 70
M Y G
Sbjct 74 MKSYIPPKG 82
> hsa:441795 HMGB3P27; high-mobility group box 3 pseudogene 27;
K11296 high mobility group protein B3
Length=207
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
KRP + +FLF +E+ + K NPG + + AKK GE WK + D K + AAK K+ Y
Sbjct 93 KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKY 152
Query 59 EKEMVEYKASGGGGGS 74
EK++ YK+ G G+
Sbjct 153 EKDVAVYKSKGKSDGA 168
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP + EF+KK E WK M K+KSK+ ELA K +Y++
Sbjct 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query 61 EMVEYKASGGGGGSD 75
E+ +Y + GG D
Sbjct 74 EIKDYGPAKGGKKKD 88
> hsa:100508670 putative high mobility group protein B3-like protein-like
Length=207
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
KRP + +FLF +E+ + K NPG + + AKK GE WK + D K + AAK K+ Y
Sbjct 93 KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKY 152
Query 59 EKEMVEYKASGGGGGS 74
EK++ YK+ G G+
Sbjct 153 EKDVAVYKSKGKSDGA 168
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKKNP + EF+KK E WK M K+KSK+ ELA K +Y++
Sbjct 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query 61 EMVEYKASGGGGGSD 75
E+ +Y + GG D
Sbjct 74 EIKDYGPAKGGKKKD 88
> cel:Y48B6A.14 hmg-1.1; HMG family member (hmg-1.1)
Length=95
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEELAAKAKKNYEK 60
KR +A+F +M E RE +KK PG V + AK AG W ++ DKS+WE+ AA KK YE
Sbjct 29 KRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEV 86
Query 61 EMVEYKAS 68
++ YK S
Sbjct 87 DIANYKKS 94
> hsa:729595 HMGB3P22; high-mobility group box 3 pseudogene 22;
K11296 high mobility group protein B3
Length=182
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEEL--AAKAKKNY 58
KRP + +FLF +E R ++K NPG S+ + AKK GE W + D K + AK K+ Y
Sbjct 89 KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLKEKY 148
Query 59 EKEMVEYKASGGGGGS 74
EK++ + K+ G GS
Sbjct 149 EKDVADSKSKGKFDGS 164
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEKEM 62
+AY F+ REE KKKNP + EF+KK E WK M K+KSK++E+A K + ++EM
Sbjct 14 SAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKTDKVHCDREM 72
> hsa:100508832 hypothetical protein LOC100508832
Length=334
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FL+ +EY ++K + PG S + AKK GE W DK +E+ +AK K+ Y
Sbjct 185 KRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKY 244
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 245 EKDIAAYRAKG 255
> hsa:100506595 HMGB1P40; high-mobility group box 1 pseudogene
40
Length=156
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FL+ +EY ++K + PG S + AKK GE W DK +E+ +AK K+ Y
Sbjct 35 KRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKY 94
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 95 EKDIAAYRAKG 105
> mmu:15289 Hmgb1, DEF, HMG-1, Hmg1, MGC103168, MGC103169, MGC117896,
MGC117897, SBP-1, amphoterin, p30; high mobility group
box 1; K10802 high mobility group protein B1
Length=215
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +EYR ++K ++PG S+ + AKK GE W DK +E+ AAK K+ Y
Sbjct 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 156 EKDIAAYRAKG 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A K YE+
Sbjct 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 74 EMKTYIPPKG 83
> hsa:3146 HMGB1, DKFZp686A04236, HMG1, HMG3, SBP-1; high-mobility
group box 1; K10802 high mobility group protein B1
Length=215
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +EYR ++K ++PG S+ + AKK GE W DK +E+ AAK K+ Y
Sbjct 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 156 EKDIAAYRAKG 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A K YE+
Sbjct 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 74 EMKTYIPPKG 83
> mmu:637733 high mobility group protein B1-like; K10802 high
mobility group protein B1
Length=213
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FLF +EYR ++K ++PG S+ + AKK GE W DK +E+ AAK K+ Y
Sbjct 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 156 EKDIAAYRAKG 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A K YE+
Sbjct 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 73
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 74 EMKTYIPPKG 83
> hsa:645490 similar to hCG1991922; K10802 high mobility group
protein B1
Length=223
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+FL+ +EY ++K + PG S + AKK GE W DK +E+ +AK K+ Y
Sbjct 76 KRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKY 135
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 136 EKDIAAYRAKG 146
> cel:C32F10.5 hmg-3; HMG family member (hmg-3); K09272 structure-specific
recognition protein 1
Length=689
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KR TAY ++ N R MK+ G ++ + AKKAG WK M DK +W + AA+ K Y
Sbjct 562 KRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARY 619
Query 59 EKEMVEYKASGGG----GGSDKKKSSSK 82
E EM EYK +GGG G KKSS +
Sbjct 620 EAEMKEYKKNGGGVEKASGPSTKKSSDQ 647
> dre:550466 hmgb3b, fa19b06, fj43d02, hmgb3, wu:fa19b06, wu:fj43d02,
zgc:112073; high-mobility group box 3b; K11296 high
mobility group protein B3
Length=198
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
+AY F+ REE KKNPG +V +EF+KK E WK M K+K+K+E+LA + K Y++
Sbjct 14 SAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYDQ 73
Query 61 EMVEYKASGGGGGSDKKKSSSKKSES 86
EM+ Y G K ++ ++ S
Sbjct 74 EMMHYNPGKKGRKQKKDPNAPRRPPS 99
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEEL--AAKAKKNY 58
+RP + +FLF E R +K +NP + + AKK G W + D K L A K K Y
Sbjct 95 RRPPSGFFLFCAEQRPIIKAQNPSLGIGDVAKKLGGMWNNLSDSEKQPFLSNADKLKDKY 154
Query 59 EKEMVEYK 66
+K+M Y+
Sbjct 155 QKDMAFYR 162
> dre:321622 hmgb1, fb23c02, ik:tdsubc_1a5, wu:fb23c02, xx:tdsubc_1a5,
zgc:56110, zgc:77104; high-mobility group box 1; K10802
high mobility group protein B1
Length=205
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP +A+F+F +E+R ++K++ PG S+ + AK+ GE W ++ ++K +E+ AAK K+ Y
Sbjct 95 KRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKY 154
Query 59 EKEMVEYKASG-GGGGSDKKKSSSKKS 84
EK++ Y++ G GGG+ K S K+
Sbjct 155 EKDIAAYRSKGKVGGGAAKAPSKPDKA 181
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P +V +EF+KK E WK M K+K K+E++A K YE+
Sbjct 13 SSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYER 72
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 73 EMKNYIPPKG 82
> dre:561025 hmgb3a, wu:fb17a03, wu:fk52f12, zgc:162415; high-mobility
group box 3a; K11296 high mobility group protein B3
Length=213
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEEL--AAKAKKNY 58
KRP + +FLF +E+R ++K + P + + AKK GE W + D +K L A K K Y
Sbjct 93 KRPPSGFFLFCSEHRPQIKAQYPSLGIGDVAKKLGEMWNGLTDANKQPFLMKANKLKDKY 152
Query 59 EKEMVEYKASGGGGG 73
+K++ +YK GG
Sbjct 153 QKDVADYKTKSKAGG 167
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSVT--EFAKKAGETWKEMKDK--SKWEELAAKAKKNYEK 60
+AY F+ REE KKK+P V+ EF+K+ WK M DK S++E++A + K Y++
Sbjct 14 SAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMTDKEKSRFEDMAKQDKVRYDQ 73
Query 61 EMVEY 65
EM+ Y
Sbjct 74 EMMHY 78
> mmu:667284 Gm8556, EG667284; predicted gene 8556
Length=399
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP A+FLF +EY ++K ++PG S+ + AKK GE W DK +E+ AAK K+ Y
Sbjct 105 KRPPLAFFLFYSEYYPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 164
Query 59 EKEMVEYKASG 69
EK++ Y+A G
Sbjct 165 EKDIAAYRAKG 175
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A K +YE+
Sbjct 22 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAHYER 81
Query 61 EMVEY 65
+M Y
Sbjct 82 KMKTY 86
> mmu:619937 Gm6115, EG619937; predicted gene 6115; K10802 high
mobility group protein B1
Length=213
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A K YE+
Sbjct 14 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAIADKARYER 73
Query 61 EMVEY 65
EM Y
Sbjct 74 EMKTY 78
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 0/69 (0%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEELAAKAKKNYEK 60
KRP +A+FLF + YR ++K ++PG S+ + AKK GE W K AK+ YEK
Sbjct 96 KRPPSAFFLFCSGYRPKIKGEHPGLSIGDVAKKRGEMWNNTAADDKQXYEKKAAKEKYEK 155
Query 61 EMVEYKASG 69
++ Y+A G
Sbjct 156 DIAAYRAKG 164
> ath:AT1G20693 HMGB2; HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding
/ chromatin binding / structural constituent of chromatin
/ transcription factor
Length=142
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNP-GYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKN 57
KRP +A+F+FM ++RE KK+NP SV K AG+ WK + D K+ + A K K
Sbjct 39 KRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVE 98
Query 58 YEKEMVEY 65
YEK + Y
Sbjct 99 YEKNIKAY 106
> ath:AT3G51880 HMGB1; HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding
/ chromatin binding / structural constituent of chromatin
/ transcription factor; K10802 high mobility group protein
B1
Length=178
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGY-SVTEFAKKAGETWKEMK--DKSKWEELAAKAKKN 57
KR +A+F+F+ ++R KK+NP +V+ K G+ WK M +K+ +EE AAK K
Sbjct 54 KRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAE 113
Query 58 YEKEMVEYKASGGGGGSDKKKSSS 81
YEK+M Y + G + +KS S
Sbjct 114 YEKQMDAYNKNLEEGSDESEKSRS 137
> ath:AT2G34450 high mobility group (HMG1/2) family protein
Length=152
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGY-SVTE-FAKKAGETWKEM--KDKSKWEELAAKAKK 56
K+P TA+F F++++R++ +++NP S+ E K GE WK M ++K K+ ++A + ++
Sbjct 64 KKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKRE 123
Query 57 NYEKEMVEYKASGGGGGSDKKKSSSKKSE 85
+ + M EY G D+ ++ S SE
Sbjct 124 EFHRAMTEYTKRMESGAHDESETDSDYSE 152
> dre:795095 MGC165618, fb13a05, wu:fb13a05; zgc:165618; K10802
high mobility group protein B1
Length=165
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ REE KKK+P SV +EF+KK E WK M K+K K+E++A + K YE+
Sbjct 13 SSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYER 72
Query 61 EMVEYKASGG 70
EM Y G
Sbjct 73 EMKNYIPPKG 82
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query 22 NPGYSVTEFAKKAGETWKE--MKDKSKWEELAAKAKKNYEKEMVEYKASGGGGGSDK 76
NPG S+ + AKK GE W + K +E+ AAK K+ Y+K++ Y+ G G S K
Sbjct 84 NPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYRTKGIAGFSKK 140
> cpv:cgd8_4220 hypothetical protein
Length=230
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMK--DKSKWEELAAKAKKNY 58
KRP AY L+ R+++++K+P S+ K E WK + ++S WE A K+ Y
Sbjct 130 KRPHNAYTLWCEHIRQKVREKDPTRSL--HIKDLAEMWKNLPELERSPWERKAQDVKQKY 187
Query 59 EKEMVEYKASGGGGGSDKKKSSSKKSES 86
+M Y+ + G G + S + S
Sbjct 188 LVDMAAYRTTSGSPGHPQASSGTPPPNS 215
> tgo:TGME49_010410 high mobility group protein
Length=302
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGY--SVTEFAKKAGETWKEMKDKSK--WEELAAKAKK 56
KRP +A+ F + REE+ +KNP + E K GE W ++ D K +E A K
Sbjct 229 KRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKAVADKA 288
Query 57 NYEKEMVEYKASG 69
YE+EM+ YK G
Sbjct 289 RYEREMIAYKKGG 301
> hsa:644129 hypothetical protein LOC644129
Length=258
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
K P A+F+F +E ++K+ +PG S+++ AKK GE W + DK +E+ A K K+ Y
Sbjct 123 KSPPLAFFMFSSEDCPKIKE-HPGLSISDVAKKLGEMWNYIAEDDKHPYEKKAVKLKEKY 181
Query 59 EKEMVEYKASGGGGGSDKKK 78
EK++ + GG G D K
Sbjct 182 EKDIAAF---GGKGKPDAAK 198
> dre:553572 hmg20b, MGC110001, fc85b02, si:dkey-110c1.6, wu:fc85b02,
zgc:110001; high-mobility group 20B
Length=301
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
K P T Y F+NE RE ++ +P E K+ G W + DK ++ + A + K Y
Sbjct 54 KAPVTGYVRFLNERREHIRALHPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQY 113
Query 59 EKEMVEYKAS 68
+E+ EY+ S
Sbjct 114 ARELREYQKS 123
> cpv:cgd2_3070 high mobility group (HMG)-box
Length=182
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
KRP TAY L+ R+++++ +P ++ K E W + ++K WE A + K+ Y
Sbjct 87 KRPHTAYTLWCEHIRQKVRENDPNRALQ--MKDLAEMWNSLPEQEKGPWERKAQEFKQKY 144
Query 59 EKEMVEYKASG----GGGGS 74
EM Y+ASG GGG S
Sbjct 145 LAEMAAYRASGPTSVGGGPS 164
> xla:779314 hmg20b, MGC154833; high mobility group 20B
Length=319
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
K P T Y F+NE RE+++ ++P E K G W + +K ++ + A + K+ Y
Sbjct 69 KAPVTGYVRFLNERREQIRAQHPDLPFPEITKMLGAEWSTLPAHEKQRYLDEAERDKQQY 128
Query 59 EKEMVEYKAS 68
KE+ EY+ S
Sbjct 129 MKELREYQQS 138
> ath:AT4G23800 high mobility group (HMG1/2) family protein
Length=456
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSK--WEELAAKAKKNY 58
K P +A+ ++ NE R ++++N SV E AK GE WK + DK K +E++A K K+ Y
Sbjct 256 KHPVSAFLVYANERRAALREEN--KSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETY 313
Query 59 EKEMVEYK 66
+ M EYK
Sbjct 314 LQAMEEYK 321
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSK--WEELAAKAKKNY 58
K+P ++YFLF + R+++ ++ PG + WKE+ ++ K + AAK + Y
Sbjct 380 KKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAY 439
Query 59 EKEMVEYKASGGGGGS 74
+KE+ Y S
Sbjct 440 KKEVEAYNKKSAATTS 455
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKDKSKWEELAAKAKKNYE 59
KRP ++Y L+ + E+KK+NP E + G +KW+ L+A+ KK YE
Sbjct 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILG---------AKWKSLSAEDKKPYE 188
> xla:399067 hypothetical protein MGC68625
Length=272
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM--KDKSKWEELAAKAKKNY 58
K P T Y F+NE RE+++ ++P E K G W + +K ++ + A + K+ Y
Sbjct 69 KAPVTGYVRFLNERREQIRAQHPDLPFPEITKMLGAEWSTLPPHEKQRYLDEAERDKQQY 128
Query 59 EKEMVEYKAS 68
KE+ EY+ S
Sbjct 129 MKELREYQQS 138
> sce:YMR072W ABF2; Abf2p
Length=183
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 0/41 (0%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEM 41
KRP +AYFL++ ++R + K+NP E +K AGE W+ +
Sbjct 44 KRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNL 84
> ath:AT2G17560 HMGB4; HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding
/ chromatin binding / structural constituent of chromatin
/ transcription factor
Length=138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGY-SVTEFAKKAGETWKEMKDKSKWEELA-AKAKKN- 57
KRP +A+F+F+ ++R+E NP SV K AG WK M D+ K +A A+++K
Sbjct 36 KRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTE 95
Query 58 YEKEMVEYKASGGGGGSDKKKSSSKKSES 86
Y K + +Y G+++++ S KS+S
Sbjct 96 YIKNVQQYNLK-LASGTNREEDDSDKSKS 123
> hsa:127540 HMGB4, FLJ40388, MGC88128, dJ1007G16.5; high-mobility
group box 4; K11297 high mobility group protein B4
Length=186
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMKD--KSKWEELAAKAKKNY 58
+RP +++ LF ++ ++K++NP +SV + AK G+ W D K +E+ A + Y
Sbjct 94 RRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKY 153
Query 59 EKEMVEYK 66
+E+ Y+
Sbjct 154 FEELELYR 161
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query 5 TAYFLFMNEYREEMKKKNPGYSV--TEFAKKAGETWKEM--KDKSKWEELAAKAKKNYEK 60
++Y F+ YR + K++ P V EF++K E W+ + +K+K+E LA K Y++
Sbjct 14 SSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDKARYQE 73
Query 61 EMVEY 65
EM+ Y
Sbjct 74 EMMNY 78
> hsa:10362 HMG20B, BRAF25, BRAF35, FLJ26127, HMGX2, HMGXB2, PP7706,
SMARCE1r, SOXL, pp8857; high-mobility group 20B
Length=317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query 1 KRPQTAYFLFMNEYREEMKKKNPGYSVTEFAKKAGETWKEMK--DKSKWEELAAKAKKNY 58
K P T Y F+NE RE+++ ++P E K G W +++ +K ++ + A + K+ Y
Sbjct 71 KAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQY 130
Query 59 EKEMVEYKAS 68
KE+ Y+ S
Sbjct 131 MKELRAYQQS 140
Lambda K H
0.301 0.119 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2030857360
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40