bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_0799_orf1
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_031380 DNA-directed RNA polymerase II, putative ; K... 156 2e-38
pfa:PFB0245c DNA-directed RNA polymerase II 16 kDa subunit, pu... 142 4e-34
bbo:BBOV_III006040 17.m07533; RNA polymerase Rpb4 family prote... 131 7e-31
tpv:TP02_0359 DNA-directed RNA polymerase II subunit Rpb4; K03... 97.4 1e-20
cpv:cgd3_4320 hypothetical protein ; K03012 DNA-directed RNA p... 79.3 4e-15
ath:AT5G09920 NRPB4; NRPB4; DNA-directed RNA polymerase; K0301... 57.0 2e-08
xla:447138 polr2d, MGC85403; polymerase (RNA) II (DNA directed... 55.5 6e-08
dre:436588 polr2d, wu:fa95b11, zgc:110435; polymerase (RNA) II... 53.1 3e-07
mmu:69241 Polr2d, 2310002G05Rik, 2610028L19Rik, HSRBP4, RBP4; ... 51.6 9e-07
hsa:5433 POLR2D, HSRBP4, HSRPB4, RBP4, RPB16; polymerase (RNA)... 51.6 9e-07
cel:F43E2.2 rpb-4; RNA Polymerase II (B) subunit family member... 38.5 0.008
cel:F56D2.6 hypothetical protein; K12820 pre-mRNA-splicing fac... 33.1 0.33
sce:YJL140W RPB4, CTF15; B32; K03012 DNA-directed RNA polymera... 32.3 0.59
tgo:TGME49_113730 hypothetical protein 32.0 0.85
dre:286831 lamb4, fa05e06, wu:fa05e06; laminin, beta 4; K06245... 30.8 1.8
hsa:120425 AMICA1, AMICA, CREA7-1, CREA7-4, FLJ37080, Gm638, J... 30.4 2.2
hsa:2 A2M, CPAMD5, DKFZp779B086, S863-7; alpha-2-macroglobulin... 29.6 3.8
mmu:11637 Ak2, Ak-2, D4Ertd220e; adenylate kinase 2 (EC:2.7.4.... 29.3 5.5
mmu:77480 Kidins220, 3110039L19Rik, AI194387, AI316525, C33000... 28.1 9.8
hsa:57498 KIDINS220, ARMS, MGC163482; kinase D-interacting sub... 28.1 9.9
> tgo:TGME49_031380 DNA-directed RNA polymerase II, putative ;
K03012 DNA-directed RNA polymerase II subunit RPB4
Length=185
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 94/116 (81%), Gaps = 0/116 (0%)
Query 36 EFKNAKCLNLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIRKH 95
EF++AKCLNLCELQLIL DQLRL +R AEA L+KASY+YS+RF K+ R +V++R +
Sbjct 70 EFRSAKCLNLCELQLILSDQLRLPNTRSAEAQGLLKASYDYSTRFAKLRTRNVIVDLRNN 129
Query 96 LEREGDLQQFELALLVNLLPRTPDEAKAHIPSLIRLSPARLSRIIDTLEVFRVHAS 151
LEREGDL QFE+A LVNLLP++ DEAKA IP+L RL RL RI+D LE+FRVHA+
Sbjct 130 LEREGDLHQFEIAQLVNLLPKSLDEAKALIPTLNRLPGPRLQRILDLLEMFRVHAA 185
> pfa:PFB0245c DNA-directed RNA polymerase II 16 kDa subunit,
putative; K03012 DNA-directed RNA polymerase II subunit RPB4
Length=132
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 94/120 (78%), Gaps = 0/120 (0%)
Query 32 DLGPEFKNAKCLNLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVE 91
DLGP+FKN KCLNLCELQLILGDQLRL+ R EA LIK+SY+Y+++F + R+++V+
Sbjct 13 DLGPDFKNCKCLNLCELQLILGDQLRLTSKRNEEAQALIKSSYDYANKFAAIKNRSSIVD 72
Query 92 IRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLIRLSPARLSRIIDTLEVFRVHAS 151
IR +LER GDL ++E+A+LVNLLP+T EA+ IPSLIRL+ L+ I++ L ++++ S
Sbjct 73 IRTNLERIGDLHEYEIAMLVNLLPKTILEARYLIPSLIRLNDETLNSILEHLISYKMYVS 132
> bbo:BBOV_III006040 17.m07533; RNA polymerase Rpb4 family protein;
K03012 DNA-directed RNA polymerase II subunit RPB4
Length=129
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 85/119 (71%), Gaps = 0/119 (0%)
Query 32 DLGPEFKNAKCLNLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVE 91
++ E KNAKCLNLCEL LILGDQLRL R A LIK S+EY+SRF + R+A+V+
Sbjct 11 EVDEELKNAKCLNLCELHLILGDQLRLQHKRNENAKQLIKTSHEYASRFAILKFRSAIVD 70
Query 92 IRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLIRLSPARLSRIIDTLEVFRVHA 150
IR +EREG L +FE+A +VNLLP++ DEAK+ IPSL R+ R+ I++ LE +R +
Sbjct 71 IRTTIEREGSLHEFEMASVVNLLPKSVDEAKSLIPSLWRIPDERIDDILELLEGYRAQS 129
> tpv:TP02_0359 DNA-directed RNA polymerase II subunit Rpb4; K03012
DNA-directed RNA polymerase II subunit RPB4
Length=104
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 77/130 (59%), Gaps = 26/130 (20%)
Query 21 MDSPTQDSLAGDLGPEFKNAKCLNLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRF 80
M+S D DL PEFKN+KCLNLCEL LILGDQLRL +R
Sbjct 1 MESYNFDPTKFDLDPEFKNSKCLNLCELHLILGDQLRLHHNRND---------------- 44
Query 81 GKMTVRTAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLIRLSPARLSRII 140
TAV I ER+G L +FE+A LVNLLP++ DEAK+ IPSL R+ ++++I+
Sbjct 45 ------TAVHTI----ERDGLLHEFEMASLVNLLPKSADEAKSLIPSLCRIPDDKINKIL 94
Query 141 DTLEVFRVHA 150
+ LE +R+ +
Sbjct 95 ELLESYRIQS 104
> cpv:cgd3_4320 hypothetical protein ; K03012 DNA-directed RNA
polymerase II subunit RPB4
Length=124
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Query 36 EFKNAKCLNLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIRKH 95
E KCLNL EL+L+L D++R S EAH LIK++Y+YS +FGK+ R +V+ IR+
Sbjct 21 ELNGIKCLNLSELRLLLEDRMRTYPSGSDEAHTLIKSAYDYSYKFGKIKNRASVILIREA 80
Query 96 LEREGDLQQFELALLVNLLPRTPDEAKAHI--PSL 128
L+ L +FE+A LVNLLPRTPDEAK + PSL
Sbjct 81 LDETTKLHEFEIASLVNLLPRTPDEAKVSMKHPSL 115
> ath:AT5G09920 NRPB4; NRPB4; DNA-directed RNA polymerase; K03012
DNA-directed RNA polymerase II subunit RPB4
Length=138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query 33 LGPEFKNAKCLNLCELQLILG---DQLRLSVSRPA-EAHNLIKASYEYSSRFGKMTVRTA 88
+G EF AKCL CE+ LIL +QL+ P + + + S +Y RF + A
Sbjct 14 IGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVKRFSRYKNPDA 73
Query 89 VVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSL 128
V ++R+ L R L +FEL +L NL P T +EA A +PSL
Sbjct 74 VRQVREILSRH-QLTEFELCVLGNLCPETVEEAVAMVPSL 112
> xla:447138 polr2d, MGC85403; polymerase (RNA) II (DNA directed)
polypeptide D; K03012 DNA-directed RNA polymerase II subunit
RPB4
Length=142
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query 36 EFKNAKCLNLCELQLILG--DQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIR 93
EF++A+ L E+ ++L Q S E + + Y++RF + R + +R
Sbjct 25 EFESAETLLNSEVHMLLEHRKQQNESAEEEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query 94 KHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLI-RLSPARLSRIIDTLEVFR 147
L + L +FELA L NL P T DEAKA IPSL R L +I+D ++ R
Sbjct 85 SLL-LQKKLHRFELACLANLCPETADEAKALIPSLEGRFEEEELQQILDDIQTKR 138
> dre:436588 polr2d, wu:fa95b11, zgc:110435; polymerase (RNA)
II (DNA directed) polypeptide D (EC:2.7.7.6); K03012 DNA-directed
RNA polymerase II subunit RPB4
Length=141
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query 36 EFKNAKCLNLCELQLILG--DQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIR 93
EF+NA+ L E+ ++L Q S E + + Y++RF + R + +R
Sbjct 24 EFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 83
Query 94 KHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLI-RLSPARLSRIIDTLEVFR 147
L + L +FELA L NL P +EAKA IPSL R L +I+D ++ R
Sbjct 84 SLL-LQKKLHKFELASLANLCPEAAEEAKALIPSLEGRFEDEELQQILDDIQTKR 137
> mmu:69241 Polr2d, 2310002G05Rik, 2610028L19Rik, HSRBP4, RBP4;
polymerase (RNA) II (DNA directed) polypeptide D (EC:2.7.7.6);
K03012 DNA-directed RNA polymerase II subunit RPB4
Length=142
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query 36 EFKNAKCLNLCELQLILG--DQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIR 93
EF+ A+ L E+ ++L Q S E + + Y++RF + R + +R
Sbjct 25 EFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query 94 KHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLI-RLSPARLSRIIDTLEVFR 147
L + L +FELA L NL P T +E+KA IPSL R L +I+D ++ R
Sbjct 85 SLL-LQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 138
> hsa:5433 POLR2D, HSRBP4, HSRPB4, RBP4, RPB16; polymerase (RNA)
II (DNA directed) polypeptide D (EC:2.7.7.6); K03012 DNA-directed
RNA polymerase II subunit RPB4
Length=142
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query 36 EFKNAKCLNLCELQLILG--DQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIR 93
EF+ A+ L E+ ++L Q S E + + Y++RF + R + +R
Sbjct 25 EFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVR 84
Query 94 KHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLI-RLSPARLSRIIDTLEVFR 147
L + L +FELA L NL P T +E+KA IPSL R L +I+D ++ R
Sbjct 85 SLL-LQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 138
> cel:F43E2.2 rpb-4; RNA Polymerase II (B) subunit family member
(rpb-4); K03012 DNA-directed RNA polymerase II subunit RPB4
Length=144
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query 26 QDSLAGDLGPEFKNAKCLNL--CELQLILGDQLRLSVSRPA--EAHNLIKASYEYSSRFG 81
+D+ EF+ C L E+ L+L + + S S+ E + + Y+ R
Sbjct 16 EDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESKDEIEEMSEVFIKTLNYARRMS 75
Query 82 KMTVRTAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSL-IRLSPARLSRII 140
+ R + +R E L +FE+A + NL P +EAKA +PSL ++ + L ++
Sbjct 76 RFKNRETIRAVRAIF-SEKHLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVL 134
Query 141 DTLEVFRV 148
L+ R
Sbjct 135 KDLQSKRT 142
> cel:F56D2.6 hypothetical protein; K12820 pre-mRNA-splicing factor
ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13]
Length=739
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query 53 GDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVE----IRKHLEREGDLQQFELA 108
D +R +SR + +NL + S ++ SR + +R A+V HLER G +
Sbjct 601 ADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDN 660
Query 109 LLVNLLPRT 117
LVNL P T
Sbjct 661 QLVNLHPST 669
> sce:YJL140W RPB4, CTF15; B32; K03012 DNA-directed RNA polymerase
II subunit RPB4
Length=221
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query 70 IKASYEYSSRFGKMTVRTAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSL- 128
+K + +Y + F + + V + + L+ G L FE+A L +L T DEAK IPSL
Sbjct 141 LKNTMQYLTNFSRFRDQETVGAVIQLLKSTG-LHPFEVAQLGSLACDTADEAKTLIPSLN 199
Query 129 IRLSPARLSRIIDTL 143
++S L RI+ L
Sbjct 200 NKISDDELERILKEL 214
> tgo:TGME49_113730 hypothetical protein
Length=1153
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query 44 NLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVEIRKHLEREGD 101
N+ Q++ G L++ E +N A+ EYSS FGK +T + + RK D
Sbjct 463 NMSSAQMLSGHVLQIE-----EGYNTYNATTEYSSSFGK---KTGIAQERKWAASAND 512
> dre:286831 lamb4, fa05e06, wu:fa05e06; laminin, beta 4; K06245
laminin, beta 4
Length=1827
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query 68 NLIKASYEYSSRFGKMTVRTAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPS 127
N K YE K + ++ L + D+++ A+L LP++PDE K I
Sbjct 1533 NRTKTKYEQEKTDTKALIEKVKTYLQDELVKPEDIEKLANAVLSIQLPKSPDEIKDMIED 1592
Query 128 LIRLSPARLSRIIDTLEVFRVHA 150
+ ++ A ++ D LE A
Sbjct 1593 IKKIL-ANITEFNDDLEYLEKQA 1614
> hsa:120425 AMICA1, AMICA, CREA7-1, CREA7-4, FLJ37080, Gm638,
JAML, MGC118814, MGC118815; adhesion molecule, interacts with
CXADR antigen 1
Length=394
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query 87 TAVVEIRKHLEREGDLQQFELALLVNLLPRTPDEAKAHIPSLIRLS 132
T + EIR +G+ Q F+ A+++++LP P E H+ LI++
Sbjct 113 TYICEIR----LKGESQVFKKAVVLHVLPEEPKELMVHVGGLIQMG 154
> hsa:2 A2M, CPAMD5, DKFZp779B086, S863-7; alpha-2-macroglobulin;
K03910 alpha-2-macroglobulin
Length=1474
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 103 QQFELALLVNLLPRTPDEAKAHIPSLIRLS 132
++F AL V LP+T DE KAH I LS
Sbjct 1337 EEFPFALGVQTLPQTCDEPKAHTSFQISLS 1366
> mmu:11637 Ak2, Ak-2, D4Ertd220e; adenylate kinase 2 (EC:2.7.4.3);
K00939 adenylate kinase [EC:2.7.4.3]
Length=239
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query 44 NLCELQLILGDQLRLSVSRPAEAHNLIKASYEYSSRFGKMTVRTAVVE-IRKHLEREGDL 102
N C L GD LR V+ +E +KA+ + GK+ VVE I K+LE
Sbjct 38 NFCVCHLATGDMLRAMVASGSELGKKLKATMDA----GKLVSDEMVVELIEKNLETPSCK 93
Query 103 QQFELALLVNLLPRTPDEAK 122
F L++ PRT +A+
Sbjct 94 NGF----LLDGFPRTVRQAE 109
> mmu:77480 Kidins220, 3110039L19Rik, AI194387, AI316525, C330002I19Rik,
mKIAA1250; kinase D-interacting substrate 220; K12460
ankyrin repeat-rich membrane spanning protein
Length=1793
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 37/175 (21%)
Query 1 YLSLQYQTSLHGVLGFDRTKMDSPTQDSLAGDLGPEFKNAKCLNLCEL--QLILGDQLRL 58
Y Q Q ++ + FD TK+ T+D + D+ P+ + LN+ + +L+ +Q+
Sbjct 904 YRRRQMQRTITRQMSFDLTKL-LVTEDWFS-DISPQTMR-RLLNIVSVTGRLLRANQITF 960
Query 59 SVSRPAEAHNLIKASYEYSSRF------------GKMTVRTAVVEIRKH----------L 96
+ R A NL + + Y + + +MT++T I K+ L
Sbjct 961 NWDRLASWINLTE-QWPYRTSWLILYLGETEGIPDQMTLKTIYERISKNIPTTKDVEPLL 1019
Query 97 EREGDLQQFELALLVNLLPRTP----DEAKAHIPSLIRLSPARLSRIIDTLEVFR 147
E +GD++ FE V L RTP + K +P + L P +L II + R
Sbjct 1020 EIDGDIRNFE----VFLSSRTPVLVARDVKTFLPCTVNLDP-KLREIIADVRAAR 1069
> hsa:57498 KIDINS220, ARMS, MGC163482; kinase D-interacting substrate,
220kDa; K12460 ankyrin repeat-rich membrane spanning
protein
Length=1771
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 37/179 (20%)
Query 1 YLSLQYQTSLHGVLGFDRTKMDSPTQDSLAGDLGPEFKNAKCLNLCEL--QLILGDQLRL 58
Y Q Q ++ + FD TK+ T+D + D+ P+ + LN+ + +L+ +Q+
Sbjct 904 YRRRQMQRTITRQMSFDLTKL-LVTEDWFS-DISPQTMR-RLLNIVSVTGRLLRANQISF 960
Query 59 SVSRPAEAHNLIKASYEYSSRF------------GKMTVRTAVVEIRKH----------L 96
+ R A NL + + Y + + +MT++T I K+ L
Sbjct 961 NWDRLASWINLTE-QWPYRTSWLILYLEETEGIPDQMTLKTIYERISKNIPTTKDVEPLL 1019
Query 97 EREGDLQQFELALLVNLLPRTP----DEAKAHIPSLIRLSPARLSRIIDTLEVFRVHAS 151
E +GD++ FE V L RTP + K +P + L P +L II + R S
Sbjct 1020 EIDGDIRNFE----VFLSSRTPVLVARDVKVFLPCTVNLDP-KLREIIADVRAAREQIS 1073
Lambda K H
0.320 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3199347004
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40