bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_0255_orf1
Length=238
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_113100 signal recognition particle 54 kda protein, ... 393 3e-109
cpv:cgd7_1640 SRP54. signal recognition 54. GTpase. ; K03106 s... 369 4e-102
tpv:TP01_0852 signal recognition particle 54 kDa protein; K031... 367 2e-101
pfa:PF14_0477 signal recognition particle SRP54, putative; K03... 357 2e-98
ath:AT1G48900 signal recognition particle 54 kDa protein 3 / S... 343 4e-94
xla:380256 srp54, MGC53033; signal recognition particle 54kDa;... 342 1e-93
ath:AT1G15310 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITI... 341 1e-93
mmu:665155 Srp54b; signal recognition particle 54B; K03106 sig... 340 2e-93
mmu:24067 Srp54a, 54kDa, Srp54; signal recognition particle 54... 340 2e-93
hsa:6729 SRP54; signal recognition particle 54kDa; K03106 sign... 340 4e-93
mmu:100101806 Srp54c, E330029E12Rik, MGC6231; signal recogniti... 338 1e-92
dre:393963 srp54, MGC55842, Srp54k, zgc:55842, zgc:85713; sign... 337 2e-92
bbo:BBOV_IV009210 23.m06227; signal recognition particle SRP54... 336 5e-92
cel:F21D5.7 hypothetical protein; K03106 signal recognition pa... 331 1e-90
sce:YPR088C SRP54, SRH1; Signal recognition particle (SRP) sub... 307 3e-83
ath:AT5G49500 signal recognition particle 54 kDa protein 2 / S... 306 4e-83
hsa:650638 signal recognition particle 54 kDa protein-like 213 4e-55
ath:AT5G03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE... 162 1e-39
eco:b2610 ffh, ECK2607, JW5414; signal recognition particle (S... 159 1e-38
eco:b3464 ftsY, ECK3448, JW3429; signal recognition particle (... 129 1e-29
ath:AT2G45770 CPFTSY; CPFTSY; 7S RNA binding / GTP binding / n... 124 4e-28
tpv:TP02_0423 signal recognition particle receptor subunit alp... 119 8e-27
pfa:PF13_0350 signal recognition particle receptor alpha subun... 108 2e-23
cpv:cgd8_5260 Srp101p GTpase. signal recognition particle rece... 107 5e-23
bbo:BBOV_III005280 17.m07472; SRP54-type protein, GTPase domai... 106 7e-23
ath:AT4G30600 signal recognition particle receptor alpha subun... 103 7e-22
tgo:TGME49_080610 signal recognition particle protein, putativ... 98.2 2e-20
dre:569063 srpr, id:ibd1064, wu:fd12f02; signal recognition pa... 94.4 3e-19
hsa:6734 SRPR, DP, MGC17355, MGC3650, MGC9571, Sralpha; signal... 94.0 4e-19
mmu:67398 Srpr, 1300011P19Rik, D11Mgi27; signal recognition pa... 94.0 4e-19
sce:YDR292C SRP101; Signal recognition particle (SRP) receptor... 92.0 2e-18
cel:F38A1.8 hypothetical protein; K13431 signal recognition pa... 91.7 2e-18
ath:AT5G66970 GTP binding; K03106 signal recognition particle ... 71.6 2e-12
hsa:221458 KIF6, C6orf102, DKFZp451I2418, MGC33317, dJ1043E3.1... 33.1 1.0
mmu:319991 Kif6, D130004B10Rik, D130084M03Rik; kinesin family ... 33.1 1.0
cel:F57C12.5 mrp-1; Multidrug Resistance Protein family member... 32.7 1.1
dre:334490 hnrnpu, MGC111835, MGC136480, hnrpu, wu:fa66f11, wu... 32.7 1.2
eco:b2750 cysC, ECK2745, JW2720; adenosine 5'-phosphosulfate k... 32.3 1.4
dre:563833 immunity-related GTPase family, cinema-like 32.3 1.7
dre:797731 irgf3; immunity-related GTPase family, f3 32.0 2.0
mmu:66887 Lonp2, 1300002A08Rik, AU015403, Lonp; lon peptidase ... 32.0 2.2
cel:F57C12.4 mrp-2; Multidrug Resistance Protein family member... 31.2 3.2
hsa:3192 HNRNPU, HNRPU, SAF-A, U21.1, hnRNP_U; heterogeneous n... 30.8 4.0
mmu:51810 Hnrnpu, AA408410, AI256620, AL024194, AL024437, AW55... 30.8 4.3
cel:K02B2.1 hypothetical protein; K01103 6-phosphofructo-2-kin... 30.8 4.4
cel:Y41E3.11 hypothetical protein 30.4 5.2
dre:553438 hypothetical protein LOC553438; K10397 kinesin fami... 30.0 7.0
dre:100332824 ATP-binding cassette, sub-family C (CFTR/MRP), m... 30.0 7.7
dre:393561 abcc2, MGC66072, zgc:66072; ATP-binding cassette, s... 30.0 7.8
dre:100334180 multidrug resistance protein 1-like 29.6 9.4
> tgo:TGME49_113100 signal recognition particle 54 kda protein,
putative (EC:2.7.1.25); K03106 signal recognition particle
subunit SRP54
Length=582
Score = 393 bits (1010), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 189/233 (81%), Positives = 221/233 (94%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
++G +NV+MFVGLQGSGKTTTCTKYA YYQRKGWR ALVCADTFRAGAFDQLKQNATK R
Sbjct 169 RKGATNVIMFVGLQGSGKTTTCTKYAHYYQRKGWRVALVCADTFRAGAFDQLKQNATKVR 228
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPF+GSYTEADPVKIAEEGV+QFR E+YD+IIVDTSGRH+QEAALF+EM+QVA+AV+PDD
Sbjct 229 IPFYGSYTEADPVKIAEEGVEQFRREKYDMIIVDTSGRHKQEAALFDEMKQVAEAVDPDD 288
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
+VFV+DSHIGQAC++QA AF+ SV VGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG
Sbjct 289 VVFVMDSHIGQACFDQAQAFSDSVDVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 348
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EHFDDF+ F+ANSFVSRLLGLGD+G L ++LKE++S EKQQ++++R++KG+FT
Sbjct 349 EHFDDFEAFEANSFVSRLLGLGDVGGLFSTLKEMVSVEKQQELMDRLSKGRFT 401
> cpv:cgd7_1640 SRP54. signal recognition 54. GTpase. ; K03106
signal recognition particle subunit SRP54
Length=515
Score = 369 bits (948), Expect = 4e-102, Method: Compositional matrix adjust.
Identities = 167/233 (71%), Positives = 202/233 (86%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
+R SNV++FVGLQGSGKTTTCTK+A YYQR+GW+TALVCADTFRAGAFDQLKQNATK +
Sbjct 112 QRDKSNVIVFVGLQGSGKTTTCTKFANYYQRRGWKTALVCADTFRAGAFDQLKQNATKVK 171
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPF+GSYTE DPVKIA +GV++FR E YDLIIVDTSGRH+QE++LF EM+QV NPDD
Sbjct 172 IPFYGSYTETDPVKIARDGVREFRKEGYDLIIVDTSGRHKQESSLFVEMEQVVMETNPDD 231
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
+VFV+DSHIGQACY+QA AF ++V VGSVI+TKLDGHAKGGGALSAVAATGAPIIF+G+G
Sbjct 232 VVFVMDSHIGQACYDQAMAFCNAVDVGSVIITKLDGHAKGGGALSAVAATGAPIIFIGTG 291
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EHFD+F+PF+ FVSRLLGLGD+ L+ + EV+ ++Q M+ R+ +G FT
Sbjct 292 EHFDEFEPFETKGFVSRLLGLGDISGLMAKINEVVPLDRQPDMVNRLVQGIFT 344
> tpv:TP01_0852 signal recognition particle 54 kDa protein; K03106
signal recognition particle subunit SRP54
Length=495
Score = 367 bits (942), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 161/233 (69%), Positives = 205/233 (87%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
K+G NV+MFVGLQG+GKTT+CTK+A +YQRKGWRTAL+CADTFRAGAFDQLKQNA K +
Sbjct 97 KKGRCNVIMFVGLQGAGKTTSCTKFAYHYQRKGWRTALICADTFRAGAFDQLKQNAAKVK 156
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
I F+GSY+EA+P K+A +GV +F++E+YD+IIVDTSGRH+QE ALF+EM+ + DAV PD+
Sbjct 157 ISFYGSYSEANPAKVAADGVARFKEEKYDMIIVDTSGRHKQEDALFDEMKLIYDAVQPDE 216
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
+VFV+DSHIGQACY+QAAAF +V VGSVI+TKLDGHAKGGGALSAV+AT +PIIF+G+G
Sbjct 217 VVFVMDSHIGQACYDQAAAFNKAVDVGSVIITKLDGHAKGGGALSAVSATNSPIIFIGTG 276
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EHFDDF+PFD SF+SRLLG GD+ L+N+LK+VI+ + + +++RIA KFT
Sbjct 277 EHFDDFEPFDPKSFISRLLGFGDINGLINTLKDVINLDDKPDLLDRIASAKFT 329
> pfa:PF14_0477 signal recognition particle SRP54, putative; K03106
signal recognition particle subunit SRP54
Length=500
Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 201/232 (86%), Gaps = 0/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV++FVGLQGSGKTTTCTKYA YYQ+KG++TALVCADTFRAGAFDQLKQNA K +I
Sbjct 98 KGKRNVILFVGLQGSGKTTTCTKYAHYYQKKGFKTALVCADTFRAGAFDQLKQNAAKVKI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSY+E DPVKIA +GV F ++YDLIIVD+SGRH+QE LFEEM QV +++ P++I
Sbjct 158 PFYGSYSEVDPVKIATDGVNAFLKDKYDLIIVDSSGRHKQENELFEEMIQVENSIQPEEI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
+FV+DSHIGQ+C++QA AF +SV +GS+I+TK+DGHAKGGGALSAVAATG PI F+G+GE
Sbjct 218 IFVIDSHIGQSCHDQAMAFKNSVSLGSIIITKIDGHAKGGGALSAVAATGCPITFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H +DF+ F+A SFVSRLLGLGD+ LV+++KEVI +KQ +++ R++KGKF
Sbjct 278 HVNDFEKFEAKSFVSRLLGLGDISGLVSTIKEVIDIDKQPELMNRLSKGKFV 329
> ath:AT1G48900 signal recognition particle 54 kDa protein 3 /
SRP54 (SRP-54C); K03106 signal recognition particle subunit
SRP54
Length=431
Score = 343 bits (879), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 156/233 (66%), Positives = 199/233 (85%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
K+ ++VVMFVGLQG+GKTTTCTKYA Y+Q+KG++ ALVCADTFRAGAFDQLKQNATKA+
Sbjct 97 KKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAK 156
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPF+GSYTE+DPVKIA EGV F+ E DLIIVDTSGRH+QEA+LFEEM+QVA+A PD
Sbjct 157 IPFYGSYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDL 216
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
++FV+DS IGQA ++QA AF SV VG+VI+TK+DGHAKGGGALSAVAAT +P+IF+G+G
Sbjct 217 VIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTG 276
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EH D+F+ FD FVSRLLG+GD V+ L+EV+ ++Q +++E++++G FT
Sbjct 277 EHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFT 329
> xla:380256 srp54, MGC53033; signal recognition particle 54kDa;
K03106 signal recognition particle subunit SRP54
Length=504
Score = 342 bits (876), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 154/232 (66%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV+MFVGLQGSGKTTTCTK A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGKPNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F++E ++++IVDTSGRH+QE +LFEEM QV++AV PD+I
Sbjct 158 PFYGSYTEMDPVNIAYEGVEKFKNENFEIVIVDTSGRHKQEDSLFEEMLQVSNAVQPDNI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E ++ + + MI+++ G+FT
Sbjct 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LNLDDNEAMIDKLKHGQFT 328
> ath:AT1G15310 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION
PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding
/ mRNA binding / nucleoside-triphosphatase/ nucleotide binding;
K03106 signal recognition particle subunit SRP54
Length=479
Score = 341 bits (875), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 156/233 (66%), Positives = 197/233 (84%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
K+ +VVMFVGLQG+GKTTTCTKYA Y+Q+KG++ ALVCADTFRAGAFDQLKQNATKA+
Sbjct 97 KKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAK 156
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPF+GSYTE+DPVKIA EGV +F+ E+ DLIIVDTSGRH+Q A+LFEEM+QVA+A PD
Sbjct 157 IPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDL 216
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
++FV+DS IGQA +EQA AF +V VG+VI+TK+DGHAKGGGALSAVAAT +P+IF+G+G
Sbjct 217 VIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTG 276
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EH D+F+ FD FVSRLLG GD LV+ L+EV+ + Q +++E +++G FT
Sbjct 277 EHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFT 329
> mmu:665155 Srp54b; signal recognition particle 54B; K03106 signal
recognition particle subunit SRP54
Length=504
Score = 340 bits (872), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 193/232 (83%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV+MFVGLQGSGKTTTC+K A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F++E +++IIVDTSGRH+QE +LFEEM QV++A+ PD+I
Sbjct 158 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E + + + +IE++ G+FT
Sbjct 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFT 328
> mmu:24067 Srp54a, 54kDa, Srp54; signal recognition particle
54A; K03106 signal recognition particle subunit SRP54
Length=504
Score = 340 bits (872), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 193/232 (83%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV+MFVGLQGSGKTTTC+K A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F++E +++IIVDTSGRH+QE +LFEEM QV++A+ PD+I
Sbjct 158 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E + + + +IE++ G+FT
Sbjct 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFT 328
> hsa:6729 SRP54; signal recognition particle 54kDa; K03106 signal
recognition particle subunit SRP54
Length=455
Score = 340 bits (871), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 154/232 (66%), Positives = 193/232 (83%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV+MFVGLQGSGKTTTC+K A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 49 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 108
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F++E +++IIVDTSGRH+QE +LFEEM QVA+A+ PD+I
Sbjct 109 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNI 168
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 169 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 228
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E + + + +IE++ G+FT
Sbjct 229 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFT 279
> mmu:100101806 Srp54c, E330029E12Rik, MGC6231; signal recognition
particle 54C; K03106 signal recognition particle subunit
SRP54
Length=504
Score = 338 bits (867), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 192/232 (82%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV+MFVGLQGSGKTTTC+K A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F++E +++IIVDTSGRH+QE +LFEEM QV++A+ PD+I
Sbjct 158 PFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E + + + +IE+ G+FT
Sbjct 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNKALIEKWKHGQFT 328
> dre:393963 srp54, MGC55842, Srp54k, zgc:55842, zgc:85713; signal
recognition particle 54; K03106 signal recognition particle
subunit SRP54
Length=504
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 152/232 (65%), Positives = 194/232 (83%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G +NV+MFVGLQGSGKTTTC+K A Y+QRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGKNNVIMFVGLQGSGKTTTCSKLAYYFQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSYTE DPV IA EGV++F+ E +++IIVDTSGRH+QE +LFEEM QV++AV PD+I
Sbjct 158 PFYGSYTEMDPVIIAAEGVEKFKSENFEIIIVDTSGRHKQEDSLFEEMLQVSNAVQPDNI 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
V+V+D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GE
Sbjct 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+PF F+S+LLG+GD+ L++ + E + + +++I+++ G+FT
Sbjct 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEELIDKLKHGQFT 328
> bbo:BBOV_IV009210 23.m06227; signal recognition particle SRP54
protein; K03106 signal recognition particle subunit SRP54
Length=499
Score = 336 bits (861), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 156/233 (66%), Positives = 207/233 (88%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
K+G++N++MFVGLQG+GKTTTCTK+A +YQ+KGWRTAL+CADTFRAGAFDQLKQNA K +
Sbjct 97 KKGHANIIMFVGLQGAGKTTTCTKFAYHYQKKGWRTALICADTFRAGAFDQLKQNAAKVK 156
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPFFGSY+EA+ V++A EGV +F++E+YD+IIVDTSGRH+QE +LFEEM+ + +AV PDD
Sbjct 157 IPFFGSYSEANAVRVAAEGVAKFKEEKYDIIIVDTSGRHKQEESLFEEMRLIHEAVKPDD 216
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
++FV+DSHIGQACY+QAAAF V VGSVI+TKLDGHAKGGGAL+AVAAT +PIIF+G+G
Sbjct 217 VIFVMDSHIGQACYDQAAAFNKVVDVGSVIITKLDGHAKGGGALAAVAATNSPIIFIGTG 276
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EHFD+F+ FDA SFVSR+LG+GD+ L+N+++E++ ++M++RI+ G +T
Sbjct 277 EHFDNFEKFDAKSFVSRMLGMGDINGLINTIQEIVGMNTNKEMVDRISSGIYT 329
> cel:F21D5.7 hypothetical protein; K03106 signal recognition
particle subunit SRP54
Length=496
Score = 331 bits (849), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 152/232 (65%), Positives = 192/232 (82%), Gaps = 1/232 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
+G NV MFVGLQGSGKTTTCTK A YYQRKGW+T L+CADTFRAGAFDQLKQNATKARI
Sbjct 98 KGRRNVFMFVGLQGSGKTTTCTKMAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI 157
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
PF+GSY+E DPVKIA EGV++F E +++IIVDTSGRH+QEA+LFEEM QV++AV PD++
Sbjct 158 PFYGSYSEIDPVKIAAEGVEKFTQEGFEIIIVDTSGRHKQEASLFEEMLQVSNAVTPDNV 217
Query 127 VFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGE 186
VFV+D+ IGQAC QA AF+ +V V SVI+TKLD HAKGGGALSAVA T +P+IF+G+GE
Sbjct 218 VFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGE 277
Query 187 HFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
H DDF+ F SFV +LLG+GD+ LV+ + + I + ++++ R+ +G+FT
Sbjct 278 HIDDFEIFKPKSFVQKLLGMGDIAGLVDMVND-IGIQDNKELVGRLKQGQFT 328
> sce:YPR088C SRP54, SRH1; Signal recognition particle (SRP) subunit
(homolog of mammalian SRP54); contains the signal sequence-binding
activity of SRP, interacts with the SRP RNA, and
mediates binding of SRP to signal receptor; contains GTPase
domain; K03106 signal recognition particle subunit SRP54
Length=541
Score = 307 bits (786), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 133/233 (57%), Positives = 182/233 (78%), Gaps = 0/233 (0%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR 65
K+ +N++MFVGLQGSGKTT+CTK A+YY ++G++ LVCADTFRAGAFDQLKQNA +AR
Sbjct 105 KKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRAR 164
Query 66 IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDD 125
IPF+GSYTE DP K+AEEG+ +F+ E++D+IIVDTSGRH QE LF+EM ++++ + P+
Sbjct 165 IPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQ 224
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
+ V+D+ IGQA +Q+ AF S G++I+TK+DGHA+GGGA+SAVAAT PIIF+G+G
Sbjct 225 TIMVLDASIGQAAEQQSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTG 284
Query 186 EHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
EH D + F SF+S+LLG+GD+ +L L+ V + E + +E I KGKFT
Sbjct 285 EHIHDLEKFSPKSFISKLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFT 337
> ath:AT5G49500 signal recognition particle 54 kDa protein 2 /
SRP54 (SRP-54B); K03106 signal recognition particle subunit
SRP54
Length=497
Score = 306 bits (784), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 185/235 (78%), Gaps = 2/235 (0%)
Query 6 KRGYSNVVMFVGLQGS--GKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATK 63
K+ +VVMFVGLQG K + +RKG++ ALVCADTFRAGAFDQLKQNATK
Sbjct 97 KKAKPSVVMFVGLQGEVLEKPQLVPSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATK 156
Query 64 ARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNP 123
++IP++GSYT +DPVKIA EGV +F+ E DLIIVDTSGRH+Q+A+LFEEM+Q+++A P
Sbjct 157 SKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSGRHKQQASLFEEMRQISEATKP 216
Query 124 DDIVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLG 183
D ++FV+DS IGQ +EQA AF +V VG+VI+TK+DGHAKGGG LSAVAAT +P+IF+G
Sbjct 217 DLVIFVMDSSIGQTAFEQARAFKQTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIG 276
Query 184 SGEHFDDFDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKFT 238
+GEH D+F+ FDA FVSRLLG GDM VN L+EV+ ++Q +++E ++ GKFT
Sbjct 277 TGEHMDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFT 331
> hsa:650638 signal recognition particle 54 kDa protein-like
Length=168
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 131/165 (79%), Gaps = 1/165 (0%)
Query 71 SYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVV 130
SYTE DPV IA EGV++F++E +++IIVDTSGRH+QE +LFEEM QVA+A+ PD+IV+V+
Sbjct 4 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 63
Query 131 DSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDD 190
D+ IGQAC QA AF V V SVIVTKLDGHAKGGGALSAVAAT +PIIF+G+GEH DD
Sbjct 64 DASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDD 123
Query 191 FDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKG 235
F+PF F+S+LLG+GD+ L++ + E + + + +IE++ G
Sbjct 124 FEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHG 167
> ath:AT5G03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE
54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding
/ signal sequence binding; K03106 signal recognition particle
subunit SRP54
Length=564
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 0/227 (0%)
Query 11 NVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFG 70
V++ GLQG GKTT C K A Y +++G L+ D +R A DQL + +P +
Sbjct 177 TVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYT 236
Query 71 SYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVV 130
+ T+ P IA++G+++ + D++I+DT+GR + + + +E++ V +NP +++ VV
Sbjct 237 AGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVV 296
Query 131 DSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDD 190
D+ GQ F + + I+TKLDG ++GG ALS +G PI +G GE +D
Sbjct 297 DAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 356
Query 191 FDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKGKF 237
+PF + R+LG+GD+ + V EV+ E + + ++I KF
Sbjct 357 LEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKF 403
> eco:b2610 ffh, ECK2607, JW5414; signal recognition particle
(SRP) component with 4.5S RNA (ffs); K03106 signal recognition
particle subunit SRP54
Length=453
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 134/225 (59%), Gaps = 1/225 (0%)
Query 12 VVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVC-ADTFRAGAFDQLKQNATKARIPFFG 70
VV+ GLQG+GKTT+ K + + K + LV AD +R A QL+ A + + FF
Sbjct 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP 161
Query 71 SYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVV 130
S PV I +++ + + YD+++VDT+GR + A+ +E++QV ++NP + +FVV
Sbjct 162 SDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVV 221
Query 131 DSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSGEHFDD 190
D+ GQ A AF ++P+ V++TK+DG A+GG ALS TG PI FLG GE +
Sbjct 222 DAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEA 281
Query 191 FDPFDANSFVSRLLGLGDMGALVNSLKEVISTEKQQQMIERIAKG 235
+PF + SR+LG+GD+ +L+ ++ + + +++ ++ KG
Sbjct 282 LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKG 326
> eco:b3464 ftsY, ECK3448, JW3429; signal recognition particle
(SRP) receptor; K03110 fused signal recognition particle receptor
Length=497
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 6/203 (2%)
Query 12 VVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFGS 71
V++ VG+ G GKTTT K A ++++G L DTFRA A +QL+ + IP
Sbjct 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ 354
Query 72 YTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVA------DAVNPDD 125
+T AD + + +Q + D++I DT+GR + ++ L EE++++ D P +
Sbjct 355 HTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE 414
Query 126 IVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFLGSG 185
++ +D+ GQ QA F +V + + +TKLDG AKGG S G PI ++G G
Sbjct 415 VMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVG 474
Query 186 EHFDDFDPFDANSFVSRLLGLGD 208
E +D PF A+ F+ L D
Sbjct 475 ERIEDLRPFKADDFIEALFARED 497
> ath:AT2G45770 CPFTSY; CPFTSY; 7S RNA binding / GTP binding /
nucleoside-triphosphatase/ nucleotide binding; K03110 fused
signal recognition particle receptor
Length=366
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 11/199 (5%)
Query 12 VVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFGS 71
V+M VG+ G GKTT+ K A + +G + + DTFRA A DQL+ A +
Sbjct 166 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV-- 223
Query 72 YTEADPVKIA---EEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVN------ 122
E D K A + V++ ++E YD+++ DTSGR +L EE+ AV
Sbjct 224 VAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGA 283
Query 123 PDDIVFVVDSHIGQACYEQAAAFASSVPVGSVIVTKLDGHAKGGGALSAVAATGAPIIFL 182
P++I+ V+D + G QA F V + +I+TKLDG A+GG +S V G P+ F+
Sbjct 284 PNEILLVLDGNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFI 343
Query 183 GSGEHFDDFDPFDANSFVS 201
G GE +D PFD +FV+
Sbjct 344 GVGEAVEDLQPFDPEAFVN 362
> tpv:TP02_0423 signal recognition particle receptor subunit alpha;
K13431 signal recognition particle receptor subunit alpha
Length=579
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 110/199 (55%), Gaps = 7/199 (3%)
Query 13 VMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFGSY 72
++F+G+ G GK+T+ K A + G++ +V DTFR+GA +QLK + T + F
Sbjct 380 IVFLGVNGVGKSTSLAKVAYLLKSNGFKVLVVACDTFRSGAVEQLKTHTTNLGLHLFERG 439
Query 73 TEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDS 132
DP +IA+EG++ + ++D++++DT+GR + L + ++ NP+ I+FV ++
Sbjct 440 YGKDPAQIAKEGIKHAVNNQFDVVLIDTAGRMQDNEPLMAALTKLIVVNNPNLIIFVGEA 499
Query 133 HIGQACYEQAAAFASSVPVGS------VIVTKLDG-HAKGGGALSAVAATGAPIIFLGSG 185
+G +Q F ++ G+ +++TK D K G ALS V TG PI+F+G+G
Sbjct 500 LVGNDAVDQLKKFNLAIGKGTDRTIDALLLTKFDTVDDKVGAALSMVYITGKPILFVGNG 559
Query 186 EHFDDFDPFDANSFVSRLL 204
+ + D P + LL
Sbjct 560 QTYSDLQPLNIELITQFLL 578
> pfa:PF13_0350 signal recognition particle receptor alpha subunit,
putative; K13431 signal recognition particle receptor
subunit alpha
Length=576
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 15/216 (6%)
Query 1 KSRPLKRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCA-DTFRAGAFDQLKQ 59
+S+ + + YS ++F+G+ G GK+T K Y + KG ++ A DTFRAGA +QL+
Sbjct 362 ESKSMGKLYS--IVFLGVNGVGKSTNLAKVCYYLKNKGNLKIMIAACDTFRAGAVEQLRI 419
Query 60 NATKARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVAD 119
+A + + D IA+E + + E YD+I++DT+GR + L + ++
Sbjct 420 HANCLNVFLYEKGYGKDASAIAKEAILYAKKENYDVILIDTAGRMQDNEPLMRSLGKLIL 479
Query 120 AVNPDDIVFVVDSHIGQACYEQAAAFASSV-----------PVGSVIVTKLDG-HAKGGG 167
NPD I+FV ++ +G +Q F ++ + +I+TK D K G
Sbjct 480 YNNPDLILFVGEALVGNDAIDQLKKFNQALTDATCNSTNKRTIDGIILTKFDTVDDKVGT 539
Query 168 ALSAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRL 203
ALS V TG PI+F+G G+ + F+ N V L
Sbjct 540 ALSMVYLTGKPIVFVGVGQKYTHLKKFNVNMVVKAL 575
> cpv:cgd8_5260 Srp101p GTpase. signal recognition particle receptor
alpha subunit ; K13431 signal recognition particle receptor
subunit alpha
Length=548
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 8/200 (4%)
Query 13 VMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCA-DTFRAGAFDQLKQNATKARIPFFGS 71
++F+G+ G GK+T K + KG L+ A DTFRAGA +QLK +A + +
Sbjct 348 IVFLGVNGVGKSTNLAKVCYLLKNKGNLNVLIVACDTFRAGAIEQLKTHANCLGVQLYEK 407
Query 72 YTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVD 131
D +A++ + +D+ +D++++DT+GR + L + + ++ NP+ ++FV +
Sbjct 408 GYGKDAAMVAKDAISYAKDKGFDVVLIDTAGRMQDNVPLMKSLAKLVQVNNPNLVLFVGE 467
Query 132 SHIGQACYEQAAAFASSV------PVGSVIVTKLDG-HAKGGGALSAVAATGAPIIFLGS 184
+ +G Q F + P+ +I+TK D K G ALS V TG P++F+G+
Sbjct 468 ALVGNDAVHQLQVFNKYLVEFGDRPIDGIILTKFDTVDDKVGAALSMVYTTGQPVVFVGT 527
Query 185 GEHFDDFDPFDANSFVSRLL 204
G+ + + S V+ LL
Sbjct 528 GQKYFNLKTLSVPSVVNALL 547
> bbo:BBOV_III005280 17.m07472; SRP54-type protein, GTPase domain
containing protein; K13431 signal recognition particle receptor
subunit alpha
Length=566
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARI 66
RG V+F+G+ G GK+T+ K + G++ L+ DTFR+GA +QLK +A K +
Sbjct 354 RGEVYSVLFLGVNGVGKSTSLAKVTYLLKCNGFKVMLIACDTFRSGAVEQLKIHADKLGV 413
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDI 126
F DP I EG++ R YD +++DT+GR + L + ++ NP +
Sbjct 414 ELFERGYGKDPSAICREGLKHARANSYDAVLIDTAGRMQDNEPLMTALAKLIHVNNPHLL 473
Query 127 VFVVDSHIGQACYEQAAAFASSV-------------PVGSVIVTKLDG-HAKGGGALSAV 172
+FV ++ +G +Q F ++ + +++TK D K G ALS
Sbjct 474 LFVGEALVGNDAVDQLRKFNQAIQKMGDSSDELRGRKIDGIVLTKFDTVDDKVGAALSMC 533
Query 173 AATGAPIIFLGSGEHFDDFDPFDANSFVSRL 203
TG P++F+G+G+ + + + + V L
Sbjct 534 YITGQPVVFVGTGQTYTNLAKLEIDDVVRAL 564
> ath:AT4G30600 signal recognition particle receptor alpha subunit
family protein; K13431 signal recognition particle receptor
subunit alpha
Length=634
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query 23 KTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFGSYTEADPVKIAE 82
K+T K A + Q+ + DTFR+GA +QL+ +A + +IP F E DP +A+
Sbjct 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK 500
Query 83 EGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQA 142
E +Q+ D+++VDT+GR + L + ++ + PD ++FV ++ +G +Q
Sbjct 501 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQL 560
Query 143 AAFASSVP----------VGSVIVTKLDG-HAKGGGALSAVAATGAPIIFLGSGEHFDDF 191
+ F + + +++TK D K G ALS V +G+P++F+G G+ + D
Sbjct 561 SKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDL 620
Query 192 DPFDANSFVSRLL 204
+ + V LL
Sbjct 621 KKLNVKAIVKTLL 633
> tgo:TGME49_080610 signal recognition particle protein, putative
(EC:2.7.4.9); K13431 signal recognition particle receptor
subunit alpha
Length=564
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query 13 VMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCA-DTFRAGAFDQLKQNATKARIPFFGS 71
++F+G+ G GK+T K A Y + KG L+ A DTFRAGA +QL+ ++ ++P F
Sbjct 358 IVFLGVNGVGKSTNLAKVAYYLKHKGNLDVLIAACDTFRAGAVEQLRTHSRCLQVPLFER 417
Query 72 YTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVD 131
D IA E + R E D++++DT+GR + L + ++ +PD I+FV +
Sbjct 418 GYGKDAAAIAREALATARQEGRDVVLIDTAGRMQDNEPLMRSLAKLVAMNSPDMILFVGE 477
Query 132 SHIGQACYEQAAAFASSV------------PVGSVIVTKLDG-HAKGGGALSAVAATGAP 178
+ +G +Q F ++ V +I+TK D K G ALS V TG P
Sbjct 478 ALVGNDAVDQLKKFNQALVDLTALGGRPPRTVDGIILTKFDTVDDKVGAALSMVYITGQP 537
Query 179 IIFLGSGEHFDDFDPFDANSFVSRLL 204
++F+G+G+ + + + V LL
Sbjct 538 VVFVGTGQKYPNLKKLNPTMVVKALL 563
> dre:569063 srpr, id:ibd1064, wu:fd12f02; signal recognition
particle receptor (docking protein); K13431 signal recognition
particle receptor subunit alpha
Length=650
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query 12 VVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKAR------ 65
V+ F G+ G GK+T K + + G+ + DTFRAGA +QL+ + +
Sbjct 432 VITFCGVNGVGKSTNLAKISYWLIENGFTVLIAACDTFRAGAVEQLRTHQRRLNSLHPPE 491
Query 66 -------IPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVA 118
+ F D IA E + R++ +D++++DT+GR + A L + ++
Sbjct 492 KHGGQPAVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLIDTAGRMQDNAPLMTALAKLI 551
Query 119 DAVNPDDIVFVVDSHIGQACYEQAAAFASSVP----------VGSVIVTKLDG-HAKGGG 167
PD ++FV ++ +G +Q F ++ + +++TK D K G
Sbjct 552 AVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSKSDKPRLIDGIVLTKFDTIDDKVGA 611
Query 168 ALSAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRLL 204
A+S TG PI+F+G+G+ + D +A + VS L+
Sbjct 612 AISMTYITGQPIVFVGTGQTYSDLRSLNARAVVSALM 648
> hsa:6734 SRPR, DP, MGC17355, MGC3650, MGC9571, Sralpha; signal
recognition particle receptor (docking protein); K13431 signal
recognition particle receptor subunit alpha
Length=610
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLK------- 58
+R VV F G+ G GK+T K + + G+ + DTFRAGA +QL+
Sbjct 386 RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLS 445
Query 59 ------QNATKARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFE 112
++ + + F D IA E + R++ +D+++VDT+GR + A L
Sbjct 446 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 505
Query 113 EMQQVADAVNPDDIVFVVDSHIGQACYEQAAAFASSVP----------VGSVIVTKLDG- 161
+ ++ PD ++FV ++ +G +Q F ++ + +++TK D
Sbjct 506 ALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTI 565
Query 162 HAKGGGALSAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRLL 204
K G A+S T PI+F+G+G+ + D +A + V+ L+
Sbjct 566 DDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 608
> mmu:67398 Srpr, 1300011P19Rik, D11Mgi27; signal recognition
particle receptor ('docking protein'); K13431 signal recognition
particle receptor subunit alpha
Length=636
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query 6 KRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLK------- 58
+R VV F G+ G GK+T K + + G+ + DTFRAGA +QL+
Sbjct 412 RRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLT 471
Query 59 ------QNATKARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFE 112
++ + + F D IA E + R++ +D+++VDT+GR + A L
Sbjct 472 ALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMT 531
Query 113 EMQQVADAVNPDDIVFVVDSHIGQACYEQAAAFASSVP----------VGSVIVTKLDG- 161
+ ++ PD ++FV ++ +G +Q F ++ + +++TK D
Sbjct 532 ALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTI 591
Query 162 HAKGGGALSAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRLL 204
K G A+S T PI+F+G+G+ + D +A + V+ L+
Sbjct 592 DDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 634
> sce:YDR292C SRP101; Signal recognition particle (SRP) receptor
- alpha subunit; contain GTPase domains; involved in SRP-dependent
protein targeting; interacts with Srp102p; K13431
signal recognition particle receptor subunit alpha
Length=621
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 29/222 (13%)
Query 12 VVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLK------------- 58
V VG+ G GK+T +K A + + ++ +V DTFR+GA +QL+
Sbjct 399 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDS 458
Query 59 --QNATKARIPFFGSYTE--------ADPV-KIAEEGVQQFRDERYDLIIVDTSGRHRQE 107
+ + R Y E +D V KIA++ ++ RD+ +D++++DT+GR +
Sbjct 459 HVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHND 518
Query 108 AALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQAAAFASSVPVGS----VIVTKLDGHA 163
L ++ AD PD I+ V ++ +G +QA F + G I++K D
Sbjct 519 PTLMSPLKSFADQAKPDKIIMVGEALVGTDSVQQAKNFNDAFGKGRNLDFFIISKCDTVG 578
Query 164 KGGGAL-SAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRLL 204
+ G + + V ATG PI+F+G G+ + D V+ L+
Sbjct 579 EMLGTMVNMVYATGIPILFVGVGQTYTDLRTLSVKWAVNTLM 620
> cel:F38A1.8 hypothetical protein; K13431 signal recognition
particle receptor subunit alpha
Length=625
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 18/216 (8%)
Query 8 GYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNAT----- 62
G V++F G+ G GK+T K + R + DTFRAGA +QL+ +A
Sbjct 410 GRPYVIVFCGVNGVGKSTNLAKITFWLTENKHRVLIAAGDTFRAGAVEQLRTHARYLNDL 469
Query 63 -KARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAV 121
K + DP +A +++ ++ +D+++VDT+GR + L E+ ++
Sbjct 470 HKNSVLLHEQGYGKDPAGLAAAAIKKAAEQDFDVVLVDTAGRMQDNEPLMRELAKLIRVN 529
Query 122 NPDDIVFVVDSHIGQACYEQAAAFASSVP-----------VGSVIVTKLDG-HAKGGGAL 169
PD ++FV ++ +G +Q F ++ + +++TK D K G A+
Sbjct 530 EPDLVLFVGEALVGNEAVDQLVKFNEALANHASPGQKPRLIDGIVLTKFDTIDDKVGAAV 589
Query 170 SAVAATGAPIIFLGSGEHFDDFDPFDANSFVSRLLG 205
S TG PI+F+G G+ + D + + V LL
Sbjct 590 SMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLLN 625
> ath:AT5G66970 GTP binding; K03106 signal recognition particle
subunit SRP54
Length=175
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query 11 NVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATKARIPFFG 70
++VMF+GL+G KT TC KYA Y+++KG+R ALVCADTF+ AF +L + A K +P +
Sbjct 100 SIVMFIGLRGVDKTKTCAKYARYHRKKGFRPALVCADTFKFDAFVRLNK-AAKDEVPVYA 158
Query 71 SY 72
Y
Sbjct 159 RY 160
> hsa:221458 KIF6, C6orf102, DKFZp451I2418, MGC33317, dJ1043E3.1,
dJ137F1.4, dJ188D3.1; kinesin family member 6; K10397 kinesin
family member 6/9
Length=814
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 31/139 (22%)
Query 8 GYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATK---A 64
GY+ + G GSGKT T T A Y +G + T + F+QL+++++K
Sbjct 88 GYNGTIFAYGQTGSGKTFTITGGAERYSDRG-----IIPRTL-SYIFEQLQKDSSKIYTT 141
Query 65 RIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPD 124
I + Y E YDL+ R EA+ E++ +V +PD
Sbjct 142 HISYLEIYNECG----------------YDLL------DPRHEASSLEDLPKVTILEDPD 179
Query 125 DIVFVVDSHIGQACYEQAA 143
+ + + + QA E+ A
Sbjct 180 QNIHLKNLTLHQATTEEEA 198
> mmu:319991 Kif6, D130004B10Rik, D130084M03Rik; kinesin family
member 6; K10397 kinesin family member 6/9
Length=802
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 31/139 (22%)
Query 8 GYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATK---A 64
GY+ + G GSGKT T T A Y +G + T + F+QL+++++K
Sbjct 88 GYNGTIFAYGQTGSGKTFTITGGAERYSDRG-----IIPRTL-SYIFEQLQKDSSKIYTT 141
Query 65 RIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPD 124
I + Y E YDL+ R EA+ E++ +V +PD
Sbjct 142 HISYLEIYNECG----------------YDLL------DPRHEASKLEDLPKVTILEDPD 179
Query 125 DIVFVVDSHIGQACYEQAA 143
+ + + + QA E+ A
Sbjct 180 QNIHLKNLSLHQATTEEEA 198
> cel:F57C12.5 mrp-1; Multidrug Resistance Protein family member
(mrp-1)
Length=1528
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 0/50 (0%)
Query 98 VDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQAAAFAS 147
++ SG +Q +L + Q A+ V DD + VDSH+G+ +E + A+
Sbjct 737 INLSGGQKQRVSLARAVYQNAEIVLLDDPLSAVDSHVGKHIFENVISTAT 786
> dre:334490 hnrnpu, MGC111835, MGC136480, hnrpu, wu:fa66f11,
wu:fc18b08, wu:fi89c08, zgc:111835, zgc:136480; heterogeneous
nuclear ribonucleoprotein U; K12888 heterogeneous nuclear
ribonucleoprotein U
Length=652
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query 4 PLKRGYSNVVMFVGLQGSGKTTTCTKYAL----YYQRKGWRTAL--VCADTFRAGAFDQL 57
P+ + V++ VGL GSGKTT K+ Y T L + ++ + D
Sbjct 408 PVAKKDCEVIVMVGLPGSGKTTWVVKHVEENPGKYNILSTNTVLEKLMINSVKRQNKDIT 467
Query 58 KQNATKARIPFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQV 117
K A R+PF+ K+ E ++ R D V +S R++ LF Q+
Sbjct 468 KLMAISQRVPFYLG-------KLIEIAARKKRHYILDQTNV-SSAAQRRKMCLFAGFQRK 519
Query 118 ADAVNPDDIVFVVDSHIGQACYEQAAAFASSVPVGSVIVTK 158
A +VF D ++ + ++A A +P +++ K
Sbjct 520 A------VVVFPTDENLKERAQKKAEADGKDIPEHALLKMK 554
> eco:b2750 cysC, ECK2745, JW2720; adenosine 5'-phosphosulfate
kinase (EC:2.7.1.25); K00860 adenylylsulfate kinase [EC:2.7.1.25]
Length=201
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query 1 KSRPLKRGYSNVVM-FVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQL 57
+ R L G+ VV+ F GL GSGK+T + G T L+ D R G L
Sbjct 18 QQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDL 75
> dre:563833 immunity-related GTPase family, cinema-like
Length=400
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query 17 GLQGSGKTTTCTKY-ALYYQRKGWRTALVCADTFRAGAFDQLKQNATKA-RIPFFGSYTE 74
G GSGK+T + L + KG V T + K N K +P G+
Sbjct 54 GESGSGKSTFVNAFRGLGDEDKGSAKTGVVETTLEPEVYHHPKYNNVKVWDLPGIGT--- 110
Query 75 ADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQ 106
P A+E +QQ ERYD I+ S R R+
Sbjct 111 --PNFKADEYLQQVEFERYDFFIIIASDRFRE 140
> dre:797731 irgf3; immunity-related GTPase family, f3
Length=398
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query 17 GLQGSGKTTTCTKY-ALYYQRKGWRTALVCADTFRAGAFDQLKQNATKA-RIPFFGSYTE 74
G GSGK+T + L + +G V T A++ K N K +P G+
Sbjct 52 GESGSGKSTFVNAFRGLGDEDEGSAETGVVETTMEPKAYNHPKYNNVKVWDLPGIGT--- 108
Query 75 ADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQ 106
P A+E +QQ ERYD I+ S R ++
Sbjct 109 --PNFKADEYLQQVEFERYDFFIIIASDRSKE 138
> mmu:66887 Lonp2, 1300002A08Rik, AU015403, Lonp; lon peptidase
2, peroxisomal; K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Length=432
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query 69 FGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSGRHRQEAALFEEMQQVADAVNPDDIVF 128
FG+ A VK+AE ++ + +R D+ + H E A E + AD P ++
Sbjct 148 FGAICRAVAVKVAEGQHKEAKLDRSDVADGEGCKEHVLEDAKPESISDTADLALPPEMPI 207
Query 129 VVDSH-----IGQACYE 140
++DSH +G YE
Sbjct 208 LIDSHALKDILGPPLYE 224
> cel:F57C12.4 mrp-2; Multidrug Resistance Protein family member
(mrp-2)
Length=1525
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 0/47 (0%)
Query 98 VDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQAAA 144
++ SG +Q +L + Q D + DD + VDSH+G+ +E +
Sbjct 736 INLSGGQKQRVSLARAVYQNPDIILLDDPLSAVDSHVGKHIFENVIS 782
> hsa:3192 HNRNPU, HNRPU, SAF-A, U21.1, hnRNP_U; heterogeneous
nuclear ribonucleoprotein U (scaffold attachment factor A);
K12888 heterogeneous nuclear ribonucleoprotein U
Length=806
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 0/28 (0%)
Query 4 PLKRGYSNVVMFVGLQGSGKTTTCTKYA 31
P ++ VVM +GL G+GKTT TK+A
Sbjct 472 PEEKKDCEVVMMIGLPGAGKTTWVTKHA 499
> mmu:51810 Hnrnpu, AA408410, AI256620, AL024194, AL024437, AW557595,
C86794, Hnrpu, SAFA, Sp120, hnRNP_U; heterogeneous nuclear
ribonucleoprotein U; K12888 heterogeneous nuclear ribonucleoprotein
U
Length=800
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 0/28 (0%)
Query 4 PLKRGYSNVVMFVGLQGSGKTTTCTKYA 31
P ++ VVM +GL G+GKTT TK+A
Sbjct 467 PEEKKDCEVVMMIGLPGAGKTTWVTKHA 494
> cel:K02B2.1 hypothetical protein; K01103 6-phosphofructo-2-kinase
/ fructose-2,6-bisphosphatase [EC:2.7.1.105 3.1.3.46]
Length=457
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query 11 NVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNATK----ARI 66
NV++ VGL GKT K Y + G+ T + F G + + NA A
Sbjct 30 NVIVMVGLPARGKTYISKKLCRYLKWTGFTTKV-----FNVGEYRRSDANAADAIHGANA 84
Query 67 PFFGSYTEADPVKIAEEGVQQFRDERYDLIIVDTSG 102
FF S AD +K+ E ++ ++ D + T G
Sbjct 85 SFF-SPNNADALKVRAESARRAMEDMADYLNSGTGG 119
> cel:Y41E3.11 hypothetical protein
Length=917
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query 4 PLKRGYSNVVMFVGLQGSGKTTTCTKYALYYQRKGWRTALVCADTFRAGAFDQLKQNAT- 62
P + V+M VGL G GKTT +Y + + W L+ AD D +K N
Sbjct 410 PAAKKDCTVLMTVGLPGVGKTTWVRRYLAEHPHEHW--TLISADV----VMDAMKVNGVP 463
Query 63 KARIP 67
+ R+P
Sbjct 464 RIRLP 468
> dre:553438 hypothetical protein LOC553438; K10397 kinesin family
member 6/9
Length=764
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 0/32 (0%)
Query 7 RGYSNVVMFVGLQGSGKTTTCTKYALYYQRKG 38
+GY+ +M G G+GKT T T A Y+++G
Sbjct 82 KGYNGTIMCFGQTGAGKTYTMTGAAETYKQRG 113
> dre:100332824 ATP-binding cassette, sub-family C (CFTR/MRP),
member 2-like
Length=1552
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 98 VDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQA 142
++ SG +Q +L + AD DD + VDSH+G+ +E+
Sbjct 767 INLSGGQKQRVSLARAVYSSADVYLLDDPLSAVDSHVGKHLFEKV 811
> dre:393561 abcc2, MGC66072, zgc:66072; ATP-binding cassette,
sub-family C (CFTR/MRP), member 2; K05666 ATP-binding cassette,
subfamily C (CFTR/MRP), member 2
Length=1567
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 98 VDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQA 142
++ SG +Q +L + AD DD + VDSH+G+ +E+
Sbjct 778 INLSGGQKQRVSLARAVYSSADVYLLDDPLSAVDSHVGKHLFEKV 822
> dre:100334180 multidrug resistance protein 1-like
Length=1512
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 0/45 (0%)
Query 98 VDTSGRHRQEAALFEEMQQVADAVNPDDIVFVVDSHIGQACYEQA 142
++ SG +Q +L + + AD DD + VD+H+GQ +E+
Sbjct 756 LNLSGGQKQRVSLARAVYRKADIYLLDDPLSAVDAHVGQHIFEKV 800
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 8274230796
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40