bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
           164,496 sequences; 82,071,388 total letters



Query=  Emax_0054_orf1
Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  tgo:TGME49_106290  DNA-directed RNA polymerase III largest subu...  87.4    2e-17
  cpv:cgd6_3290  DNA-directed RNA polymerase III C1 subunit ; K03...  72.8    4e-13
  pfa:PF13_0150  DNA-directed RNA polymerase 3 largest subunit (E...  68.9    6e-12


> tgo:TGME49_106290  DNA-directed RNA polymerase III largest subunit, 
putative (EC:2.7.7.6); K03018 DNA-directed RNA polymerase 
III subunit RPC1 [EC:2.7.7.6]
Length=1746

 Score = 87.4 bits (215),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query  56    RQAHNYLLGYLCIYVYIPIYKRDLPLLPYEIISWSNYLLRLIGDTHAHQLYRHQRVAIEE  115
             +Q    LL ++ +Y ++PI ++ +PLLP+EI+ WS +LL    +     L  HQ+VA+EE
Sbjct  1139  QQVRGNLLAHVAVYEWLPIREQHVPLLPFEILKWSAFLLTRTAEVVPLPLCEHQQVALEE  1198

Query  116   TGPTHQEGTDKVRIFKEELHEWLINKAKEIEEYR  149
               PTHQ GT++VR+F++EL  WL  KA ++ EYR
Sbjct  1199  -APTHQSGTERVRLFQDELWAWLERKAADVAEYR  1231


> cpv:cgd6_3290  DNA-directed RNA polymerase III C1 subunit ; K03018 
DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Length=1871

 Score = 72.8 bits (177),  Expect = 4e-13, Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query  60    NYLLGYLCIYVYIPIYKRDLPLLPYEIISWSNYLLRLIGDTHAHQLYRHQRVAIEETGPT  119
             N +L +  IY Y+PI   ++PL+P+E++ W  +L+R+  +     L  HQ+++I E+ PT
Sbjct  1208  NSVLAHYLIYNYLPIMDTNVPLIPFEMLKWMEFLIRMTRELVPSSLLVHQKISILES-PT  1266

Query  120   HQEGTDKVRIFKEELHEWLINKAKEIEEYRLYIGE  154
             HQE T K+ IF   + ++L++  ++I  YR   GE
Sbjct  1267  HQEKTHKLNIFSNNMRKFLVSHIEKISNYRKAQGE  1301


> pfa:PF13_0150  DNA-directed RNA polymerase 3 largest subunit 
(EC:2.7.7.6); K03018 DNA-directed RNA polymerase III subunit 
RPC1 [EC:2.7.7.6]
Length=2356

 Score = 68.9 bits (167),  Expect = 6e-12, Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query  42    NIVGENIVCNDPLVRQAHNYLLGYLCIYVYIPIYKRDLPLLPYEIISWSNYLLRLIGDTH  101
             NI   +++ ++   RQ    ++G++ ++ Y+  YK+   L PYEII W+++LL  + +  
Sbjct  1625  NINENDLLYDNKYYRQIFKNVIGFVSVFEYVESYKQHYILFPYEIIKWTSFLLEYLTEII  1684

Query  102   AHQLYRHQRVAIEETGPTHQEGTDKVRIFKEELHEWLINKAKEIEEY  148
                ++ H +++ +E  PTHQ+ T K++I+ EE+ +WL  KA  I +Y
Sbjct  1685  PTNIFLHTKLSKKEK-PTHQKNTGKMKIYIEEIKKWLFIKAINIYKY  1730



Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 3321543300


  Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
    Posted date:  Sep 17, 2011 11:19 AM
  Number of letters in database: 82,071,388
  Number of sequences in database:  164,496



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40