bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
164,496 sequences; 82,071,388 total letters
Query= Emax_0021_orf1
Length=152
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_008840 ATP-dependent DNA helicase, putative (EC:5.9... 77.4 2e-14
eco:b3652 recG, ECK3642, JW3627, radC, spoV; ATP-dependent DNA... 67.0 2e-11
ath:AT2G01440 ATP binding / ATP-dependent DNA helicase/ ATP-de... 54.7 1e-07
ath:AT3G02060 DEAD/DEAH box helicase, putative 44.7 1e-04
eco:b1114 mfd, ECK1100, JW1100; transcription-repair coupling ... 44.7 1e-04
sce:YDR243C PRP28; Prp28p (EC:3.6.1.-); K12858 ATP-dependent R... 38.9 0.006
xla:380261 ddx42, MGC54025; DEAD (Asp-Glu-Ala-Asp) box polypep... 35.8 0.050
tgo:TGME49_091670 RNA helicase, putative 34.7 0.12
dre:324724 dicer1, fc39d11, fc74b05, wu:fc39d11, wu:fc74b05; D... 33.5 0.24
xla:100316917 dicer1, dcr1, dicer, herna; dicer 1, ribonucleas... 33.5 0.24
hsa:23405 DICER1, DCR1, Dicer, HERNA, KIAA0928; dicer 1, ribon... 33.5 0.24
tpv:TP01_0582 RNA helicase 33.5 0.26
hsa:64135 IFIH1, Hlcd, IDDM19, MDA-5, MDA5, MGC133047; interfe... 33.5 0.26
sce:YOR046C DBP5, RAT8; Cytoplasmic ATP-dependent RNA helicase... 33.5 0.29
mmu:192119 Dicer1, 1110006F08Rik, D12Ertd7e, mKIAA0928; Dicer1... 33.1 0.37
mmu:13206 Ddx4, AV206478, Mvh, VASA; DEAD (Asp-Glu-Ala-Asp) bo... 33.1 0.38
ath:AT3G09720 DEAD/DEAH box helicase, putative; K14779 ATP-dep... 32.7 0.44
dre:565759 novel protein similar to vertebrate interferon indu... 32.7 0.46
mmu:71586 Ifih1, 9130009C22Rik, Helicard, Hlcd, MDA5, MGC90959... 32.0 0.84
cel:K12H4.8 dcr-1; DiCer Related family member (dcr-1); K11592... 30.8 1.6
hsa:55510 DDX43, CT13, DKFZp434H2114, HAGE; DEAD (Asp-Glu-Ala-... 30.8 1.6
ath:AT3G02065 DEAD/DEAH box helicase family protein 30.8 1.7
cel:F58G11.2 hypothetical protein 30.8 1.8
ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6... 30.4 2.0
hsa:11325 DDX42, FLJ43179, RHELP, RNAHP, SF3b125; DEAD (Asp-Gl... 30.4 2.2
cpv:cgd5_3870 yprA. Lhr1/Ski2 family RNA SFII helicase 30.4 2.3
mmu:72047 Ddx42, 1810047H21Rik, AW319508, AW556242, B430002H05... 30.4 2.3
tpv:TP03_0532 ATP-dependent RNA helicase; K12811 ATP-dependent... 30.4 2.4
tpv:TP03_0830 ATP-dependent RNA helicase 30.4 2.4
bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 30.4 2.5
ath:AT5G26742 emb1138 (embryo defective 1138); ATP binding / A... 30.0 2.6
pfa:PFB0860c DEAD/DEAH box helicase, putative; K14777 ATP-depe... 30.0 3.0
dre:378844 ddx27, cb843; DEAD (Asp-Glu-Ala-Asp) box polypeptid... 30.0 3.2
xla:398189 RNA helicase II/Gu 30.0 3.2
xla:398188 ddx21, MGC130693; DEAD (Asp-Glu-Ala-Asp) box polype... 30.0 3.2
dre:503932 ddx42, im:7148194, zgc:111815; DEAD (Asp-Glu-Ala-As... 29.6 3.5
tpv:TP01_0146 ATP-dependent RNA helicase; K14805 ATP-dependent... 29.6 3.6
xla:734505 ddx27, MGC114699; DEAD (Asp-Glu-Ala-Asp) box polype... 29.6 3.7
ath:AT1G74260 PUR4; PUR4 (purine biosynthesis 4); ATP binding ... 29.6 3.8
hsa:55661 DDX27, DKFZp667N057, DRS1, FLJ12917, FLJ20596, FLJ22... 29.6 4.2
mmu:100048658 Ddx43, OTTMUSG00000019690; DEAD (Asp-Glu-Ala-Asp... 29.3 4.6
hsa:168400 DDX53, CAGE, CT26; DEAD (Asp-Glu-Ala-Asp) box polyp... 29.3 4.7
cel:B0414.6 glh-3; Germ-Line Helicase family member (glh-3) 29.3 4.9
sce:YGL078C DBP3; Dbp3p (EC:3.6.1.-); K14811 ATP-dependent RNA... 29.3 5.1
xla:444342 dhx58, MGC82787; DEXH (Asp-Glu-X-His) box polypepti... 29.3 5.4
dre:567383 RecQ4-like; K10730 ATP-dependent DNA helicase Q4 [E... 29.3 5.5
sce:YOR204W DED1, SPP81; ATP-dependent DEAD (Asp-Glu-Ala-Asp)-... 29.3 5.6
tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-spli... 28.9 6.1
cpv:cgd8_4950 RecQ4 SF II RNA helicase 28.9 6.6
hsa:54514 DDX4, MGC111074, VASA; DEAD (Asp-Glu-Ala-Asp) box po... 28.9 6.9
> tgo:TGME49_008840 ATP-dependent DNA helicase, putative (EC:5.99.1.3)
Length=1042
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 53/180 (29%)
Query 26 GVETYVVDRGDQDALAEVYRQLRRCVAAGHQAYWICPFVDGAHAAAA------------- 72
GV TY++D+G Q +AE+ + +++ ++ Q +W+CP VDG A+
Sbjct 522 GVATYLIDKGSQGEMAEMMKIIKKEISKKRQVFWVCPLVDGVRDASRRRGKSSRRKKGIS 581
Query 73 ---------------------------AAAAAGGSSSR---------WRRSSSREAGYGT 96
A + GG W + + + +
Sbjct 582 GRLGSVETGDRQPAGNEVQMDTRNEEGAKSEKGGPEEEDTKDKGGEIWNKLEATQGQNDS 641
Query 97 ATSA----YNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
SA + ELRK LP+IRI +LHGR+ +E+ +VL + LL++TT++EVG+D+
Sbjct 642 KESAAVQRFEELRKLLPEIRIRLLHGRMKAEEKNEVLSELRGGTVDLLVATTVVEVGIDV 701
> eco:b3652 recG, ECK3642, JW3627, radC, spoV; ATP-dependent DNA
helicase (EC:3.6.1.-); K03655 ATP-dependent DNA helicase
RecG [EC:3.6.4.12]
Length=693
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query 50 CVAAGHQAYWICPFVDGAHAAAAAAAAAGGSSSRWRRSSSREAGYGTATSAYNELRKKLP 109
C+ G QAYW+C ++ + A AA A + EL+ LP
Sbjct 479 CITEGRQAYWVCTLIEESELLEAQAAEA----------------------TWEELKLALP 516
Query 110 DIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++ +G++HGR+ E++ V+ F ++ LL++TT+IEVGVD+
Sbjct 517 ELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDV 559
> ath:AT2G01440 ATP binding / ATP-dependent DNA helicase/ ATP-dependent
helicase/ helicase/ nucleic acid binding; K03655 ATP-dependent
DNA helicase RecG [EC:3.6.4.12]
Length=973
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query 27 VETYVVDRGDQDALAEVYRQLRRCVAAGHQAYWICPFVDGAHAAAAAAAAAGGSSSRWRR 86
VET++ + G++ + EVY + + +G + Y + P +D + AA
Sbjct 735 VETHIFE-GNETGIKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLPQLRAA---------- 783
Query 87 SSSREAGYGTATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTII 146
++ + KK P G+LHGR+ ++E+ L F + +L+ST +I
Sbjct 784 -----------SAELEIVTKKFPKYNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVI 832
Query 147 EVGVDI 152
E+GVD+
Sbjct 833 EIGVDV 838
> ath:AT3G02060 DEAD/DEAH box helicase, putative
Length=822
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
Query 104 LRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L + PDI I + HG+ K+ E+ + FA KI +LI T I+E G+DI
Sbjct 499 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDI 547
> eco:b1114 mfd, ECK1100, JW1100; transcription-repair coupling
factor; K03723 transcription-repair coupling factor (superfamily
II helicase) [EC:3.6.4.-]
Length=1148
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 0/53 (0%)
Query 100 AYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
A L + +P+ RI I HG++ +E E+V+ F + ++L+ TTIIE G+DI
Sbjct 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877
> sce:YDR243C PRP28; Prp28p (EC:3.6.1.-); K12858 ATP-dependent
RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Length=588
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 0/47 (0%)
Query 106 KKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+K ++++ ILHG S +++E L LF NK+ ++I+T + G+DI
Sbjct 457 QKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDI 503
> xla:380261 ddx42, MGC54025; DEAD (Asp-Glu-Ala-Asp) box polypeptide
42 (EC:3.6.4.13); K12835 ATP-dependent RNA helicase DDX42
[EC:3.6.4.13]
Length=947
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 110 DIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
D +G+LHG + E+ KV+ F I +L++T + G+DI
Sbjct 519 DHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARGLDI 561
> tgo:TGME49_091670 RNA helicase, putative
Length=682
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 0/57 (0%)
Query 96 TATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
TA S + L K LP R + + K++ LGLFA K +L+ T G+DI
Sbjct 522 TARSLFEALEKALPTTRPKLFSSEIDQKDRSFNLGLFARGKSRVLVCTDAASRGLDI 578
> dre:324724 dicer1, fc39d11, fc74b05, wu:fc39d11, wu:fc74b05;
Dicer1, Dcr-1 homolog (Drosophila) (EC:3.1.26.-); K11592 endoribonuclease
Dicer [EC:3.1.26.-]
Length=1865
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
Query 123 KEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++QE+VL F ++ +LLI+T+I+E GVDI
Sbjct 485 RKQEEVLRKFRAHETNLLIATSIVEEGVDI 514
> xla:100316917 dicer1, dcr1, dicer, herna; dicer 1, ribonuclease
type III; K11592 endoribonuclease Dicer [EC:3.1.26.-]
Length=1795
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
Query 123 KEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++QE+VL F ++ +LLI+T+I+E GVDI
Sbjct 491 RKQEEVLRKFRAHETNLLIATSIVEEGVDI 520
> hsa:23405 DICER1, DCR1, Dicer, HERNA, KIAA0928; dicer 1, ribonuclease
type III (EC:3.1.26.-); K11592 endoribonuclease Dicer
[EC:3.1.26.-]
Length=1829
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
Query 123 KEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++QE+VL F ++ +LLI+T+I+E GVDI
Sbjct 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDI 528
> tpv:TP01_0582 RNA helicase
Length=1764
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
IGI H LS K++E V LF K+ +LI+T+ + GV++
Sbjct 1273 IGIHHAGLSTKDRELVQDLFLNGKLKVLIATSTLAWGVNL 1312
> hsa:64135 IFIH1, Hlcd, IDDM19, MDA-5, MDA5, MGC133047; interferon
induced with helicase C domain 1 (EC:3.6.4.13); K12647
interferon-induced helicase C domain-containing protein 1 [EC:3.6.4.13]
Length=1025
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 0/33 (0%)
Query 120 LSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++ EQ++V+ F KI+LLI+TT+ E G+DI
Sbjct 766 MTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 798
> sce:YOR046C DBP5, RAT8; Cytoplasmic ATP-dependent RNA helicase
of the DEAD-box family involved in mRNA export from the nucleus;
involved in translation termination (EC:3.6.1.-); K01529
[EC:3.6.1.-]
Length=482
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query 96 TATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
TA Y +L+ + ++ ILHG L +E+++++ F + +LI+T ++ G+DI
Sbjct 342 TANVLYGKLKSEGHEV--SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 396
> mmu:192119 Dicer1, 1110006F08Rik, D12Ertd7e, mKIAA0928; Dicer1,
Dcr-1 homolog (Drosophila) (EC:3.1.26.-); K11592 endoribonuclease
Dicer [EC:3.1.26.-]
Length=1906
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 24/30 (80%), Gaps = 0/30 (0%)
Query 123 KEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++QE+VL F ++ +LLI+T+++E GVDI
Sbjct 489 RKQEEVLRKFRAHETNLLIATSVVEEGVDI 518
> mmu:13206 Ddx4, AV206478, Mvh, VASA; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 4 (EC:3.6.4.13); K13982 probable ATP-dependent
RNA helicase DDX4 [EC:3.6.4.13]
Length=728
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+HG +E+E+ LG F C K +L++T++ G+DI
Sbjct 569 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDI 605
> ath:AT3G09720 DEAD/DEAH box helicase, putative; K14779 ATP-dependent
RNA helicase DDX52/ROK1 [EC:3.6.4.13]
Length=541
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query 97 ATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVD 151
A Y+EL K +IR G++H L E+E + F + +LI+T +I G+D
Sbjct 393 AKELYDEL--KCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMD 445
> dre:565759 novel protein similar to vertebrate interferon induced
with helicase C domain 1 (IFIH1); K12647 interferon-induced
helicase C domain-containing protein 1 [EC:3.6.4.13]
Length=738
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 0/33 (0%)
Query 120 LSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++ EQ+ VL F +I+LLI+TT+ E G+DI
Sbjct 470 MTAAEQKDVLKRFRTGEINLLIATTVAEEGLDI 502
> mmu:71586 Ifih1, 9130009C22Rik, Helicard, Hlcd, MDA5, MGC90959;
interferon induced with helicase C domain 1 (EC:3.6.4.13);
K12647 interferon-induced helicase C domain-containing protein
1 [EC:3.6.4.13]
Length=976
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 0/29 (0%)
Query 124 EQEKVLGLFACNKISLLISTTIIEVGVDI 152
EQ++V+ F +I+LLI+TT+ E G+DI
Sbjct 721 EQKEVISKFRTGEINLLIATTVAEEGLDI 749
> cel:K12H4.8 dcr-1; DiCer Related family member (dcr-1); K11592
endoribonuclease Dicer [EC:3.1.26.-]
Length=1845
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
Query 123 KEQEKVLGLFACNKISLLISTTIIEVGVDI 152
K Q +VL F N+I+ LI+T+++E GVD+
Sbjct 440 KRQTEVLRRFHRNEINCLIATSVLEEGVDV 469
> hsa:55510 DDX43, CT13, DKFZp434H2114, HAGE; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 43 (EC:3.6.4.13)
Length=648
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L +I + LHG +++EK L F K+ +LI+T + G+D+
Sbjct 509 LGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDV 553
> ath:AT3G02065 DEAD/DEAH box helicase family protein
Length=505
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+HG KE+ V+G F ++ +L+ST ++ GVD+
Sbjct 388 IHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDL 424
> cel:F58G11.2 hypothetical protein
Length=958
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG S +EK++ F N+++LL++T ++ G+D+
Sbjct 674 LHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDV 710
> ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6.1.-]
Length=2146
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
IG+ H L+ ++ V LF NKI +L+ST+ + GV++
Sbjct 1634 IGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNL 1673
> hsa:11325 DDX42, FLJ43179, RHELP, RNAHP, SF3b125; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 42 (EC:3.6.4.13); K12835 ATP-dependent
RNA helicase DDX42 [EC:3.6.4.13]
Length=938
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+G+LHG + E+ KV+ F I +L++T + G+DI
Sbjct 525 LGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
> cpv:cgd5_3870 yprA. Lhr1/Ski2 family RNA SFII helicase
Length=851
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 110 DIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
D I I G +S E+ K+ L K+ ++IST +E+G+D+
Sbjct 562 DSDIQIYRGGISQTERRKLESLIFNGKVKIVISTIALELGIDV 604
> mmu:72047 Ddx42, 1810047H21Rik, AW319508, AW556242, B430002H05Rik,
RHELP, RNAHP, SF3b125; DEAD (Asp-Glu-Ala-Asp) box polypeptide
42 (EC:3.6.4.13); K12835 ATP-dependent RNA helicase
DDX42 [EC:3.6.4.13]
Length=929
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+G+LHG + E+ KV+ F I +L++T + G+DI
Sbjct 525 LGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
> tpv:TP03_0532 ATP-dependent RNA helicase; K12811 ATP-dependent
RNA helicase DDX46/PRP5 [EC:3.6.4.13]
Length=894
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 0/39 (0%)
Query 114 GILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
GILHG + ++E L F K ++LI+T+I G+D+
Sbjct 692 GILHGGVDQTDREFTLNDFREGKKTILIATSIAARGIDV 730
> tpv:TP03_0830 ATP-dependent RNA helicase
Length=707
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG + ++E++L +F +++L++T + G+DI
Sbjct 594 LHGNKTQAQRERILNMFRSGDVNVLVATDVAARGLDI 630
> bbo:BBOV_III000950 17.m07111; sec63 domain containing protein
(EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2133
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query 80 SSSRWRRSSSREAGYGTATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISL 139
S+SR S+ EA T EL++ LP +GI H L +++ V LF+ I L
Sbjct 755 SASREILSTESEAIKTT------ELKELLP-YGLGIHHAGLPRSDRKLVEDLFSDGHIQL 807
Query 140 LISTTIIEVGVDI 152
LIST + GV++
Sbjct 808 LISTATLSWGVNL 820
> ath:AT5G26742 emb1138 (embryo defective 1138); ATP binding /
ATP-dependent helicase/ RNA binding / helicase/ nucleic acid
binding / zinc ion binding
Length=748
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG +S ++E+ L F K ++L++T + G+DI
Sbjct 380 LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDI 416
> pfa:PFB0860c DEAD/DEAH box helicase, putative; K14777 ATP-dependent
RNA helicase DDX47/RRP3 [EC:3.6.4.13]
Length=562
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG+L+ ++ L F NK ++LIST + G+D+
Sbjct 425 LHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDL 461
> dre:378844 ddx27, cb843; DEAD (Asp-Glu-Ala-Asp) box polypeptide
27 (EC:3.6.4.13); K13181 ATP-dependent RNA helicase DDX27
[EC:3.6.4.13]
Length=776
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L +++G LHG LS ++ + L F +I +L++T + G+DI
Sbjct 468 LMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDI 512
> xla:398189 RNA helicase II/Gu
Length=759
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG L KE+E VL F +LI+T + G+DI
Sbjct 461 LHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDI 497
> xla:398188 ddx21, MGC130693; DEAD (Asp-Glu-Ala-Asp) box polypeptide
21
Length=800
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG L KE+E VL F +LI+T + G+DI
Sbjct 503 LHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDI 539
> dre:503932 ddx42, im:7148194, zgc:111815; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 42 (EC:3.6.1.-); K12835 ATP-dependent RNA
helicase DDX42 [EC:3.6.4.13]
Length=908
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+G+LHG + E+ KV+ F + +L++T + G+DI
Sbjct 527 LGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDI 566
> tpv:TP01_0146 ATP-dependent RNA helicase; K14805 ATP-dependent
RNA helicase DDX24/MAK5 [EC:3.6.4.13]
Length=579
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+H RL K++ L F+ NK S+LI T + G+DI
Sbjct 395 IHSRLRQKQRLNRLEKFSSNKKSILICTDVASRGLDI 431
> xla:734505 ddx27, MGC114699; DEAD (Asp-Glu-Ala-Asp) box polypeptide
27; K13181 ATP-dependent RNA helicase DDX27 [EC:3.6.4.13]
Length=758
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L +++G LHG LS ++ + L F +I +L++T + G+DI
Sbjct 448 LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI 492
> ath:AT1G74260 PUR4; PUR4 (purine biosynthesis 4); ATP binding
/ catalytic/ phosphoribosylformylglycinamidine synthase (EC:6.3.5.3);
K01952 phosphoribosylformylglycinamidine synthase
[EC:6.3.5.3]
Length=1407
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 11 GAAAAGAAATGAAAGGVETYVVDRGDQDALAEVYRQLRRCVAAGHQ 56
G AA + +G ++ V RGD + ++YR +R C+ G +
Sbjct 547 GGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYRVVRACIEMGEK 592
> hsa:55661 DDX27, DKFZp667N057, DRS1, FLJ12917, FLJ20596, FLJ22238,
MGC1018, MGC163147, PP3241, RHLP, Rrp3p, dJ686N3.1; DEAD
(Asp-Glu-Ala-Asp) box polypeptide 27 (EC:3.6.4.13); K13181
ATP-dependent RNA helicase DDX27 [EC:3.6.4.13]
Length=796
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L +++G LHG LS ++ + L F +I +L++T + G+DI
Sbjct 485 LMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDI 529
> mmu:100048658 Ddx43, OTTMUSG00000019690; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 43 (EC:3.6.4.13)
Length=646
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
L I + LHG ++EK L F K+ +LI+T + G+D+
Sbjct 507 LRHISVESLHGNREQSDREKALENFKTGKVRILIATDLASRGLDV 551
> hsa:168400 DDX53, CAGE, CT26; DEAD (Asp-Glu-Ala-Asp) box polypeptide
53 (EC:3.6.4.13)
Length=631
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
LHG +QE+ + F I +LI+T I+ G+D+
Sbjct 497 LHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDL 533
> cel:B0414.6 glh-3; Germ-Line Helicase family member (glh-3)
Length=720
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+HG KE+ L LF +LI+T ++E G+DI
Sbjct 593 IHGAREQKERSAALKLFRSGAKPVLIATAVVERGLDI 629
> sce:YGL078C DBP3; Dbp3p (EC:3.6.1.-); K14811 ATP-dependent RNA
helicase DBP3 [EC:3.6.4.13]
Length=523
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 0/40 (0%)
Query 113 IGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+ +HG LS +++ + L F K +LL++T + G+DI
Sbjct 386 VAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
> xla:444342 dhx58, MGC82787; DEXH (Asp-Glu-X-His) box polypeptide
58; K12649 ATP-dependent RNA helicase DHX58 [EC:3.6.3.14]
Length=682
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 0/33 (0%)
Query 120 LSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
++ EQ + + +F +++LLIST++ E G+DI
Sbjct 418 MTQNEQRETIEMFRKGQLNLLISTSVAEEGLDI 450
> dre:567383 RecQ4-like; K10730 ATP-dependent DNA helicase Q4
[EC:3.6.4.12]
Length=1380
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query 86 RSSSREAGYGTATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTI 145
R SS+ G SA ++RK L I H LS E+ +V F C ++ ++++T
Sbjct 893 RESSKHTG-----SARKKIRKPLKWIAEA-YHAGLSASERRRVQNNFMCGELRVVVATVA 946
Query 146 IEVGVD 151
+G+D
Sbjct 947 FGMGLD 952
> sce:YOR204W DED1, SPP81; ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box
RNA helicase, required for translation initiation of all
yeast mRNAs; mutations in human DEAD-box DBY are a frequent
cause of male infertility (EC:3.6.1.-); K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=604
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 108 LPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+ + R +HG + E+E+ L F +LL++T + G+DI
Sbjct 421 MQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDI 465
> tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2249
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 0/65 (0%)
Query 88 SSREAGYGTATSAYNELRKKLPDIRIGILHGRLSCKEQEKVLGLFACNKISLLISTTIIE 147
+SRE + N K+L IGI H L +++ V LF+ + LL+ST +
Sbjct 782 ASREILTSESEHIKNSNLKELLPFGIGIHHAGLVRSDRKLVEDLFSDKHLQLLVSTATLS 841
Query 148 VGVDI 152
GV++
Sbjct 842 WGVNL 846
> cpv:cgd8_4950 RecQ4 SF II RNA helicase
Length=1421
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 117 HGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVD 151
HG +S E+E V F NK ++ ++TT +G+D
Sbjct 782 HGMMSNSEREMVQKSFIDNKTNIFVATTSFGMGID 816
> hsa:54514 DDX4, MGC111074, VASA; DEAD (Asp-Glu-Ala-Asp) box
polypeptide 4 (EC:3.6.4.13); K13982 probable ATP-dependent RNA
helicase DDX4 [EC:3.6.4.13]
Length=690
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 0/37 (0%)
Query 116 LHGRLSCKEQEKVLGLFACNKISLLISTTIIEVGVDI 152
+HG +E+E+ LG F K +L++T++ G+DI
Sbjct 536 IHGDREQREREQALGDFRFGKCPVLVATSVAARGLDI 572
Lambda K H
0.318 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3264639800
Database: egene_temp_file_orthology_annotation_similarity_blast_database_865
Posted date: Sep 17, 2011 11:19 AM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40