bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_3161_orf1 Length=133 Score E Sequences producing significant alignments: (Bits) Value At4g30580 47.4 7e-06 Hs6041665 36.6 0.014 Hs4507371 31.2 0.55 At1g80950 31.2 0.59 7303404 30.0 1.4 YDL052c 29.6 1.6 CE06378 29.3 2.3 > At4g30580 Length=212 Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query 1 ISQLWARCAFTCAYINPNIYGKENIKGIKGPCLIISNHSSVSDIPLLGGFLPL-QHIRFV 59 I++LWA + Y NI G EN+ P + +SNH S DI L L L + +F+ Sbjct 22 IAKLWASISIYPFY-KINIEGLENLPSSDTPAVYVSNHQSFLDIYTL---LSLGKSFKFI 77 Query 60 SKAEILKWPIVGHAMREIGVVGFER 84 SK I PI+G AM +GVV +R Sbjct 78 SKTGIFVIPIIGWAMSMMGVVPLKR 102 > Hs6041665 Length=278 Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 9/78 (11%) Query 31 PCLIISNHSSVSDIPLLGGFLPLQHIRFVSKAEILKWPIVGHAMREIGV--VGFERNSLS 88 PC+I+SNH S+ D+ L LP + ++ ++K E+L VG M GV + +R+S + Sbjct 91 PCVIVSNHQSILDMMGLMEVLPERCVQ-IAKRELLFLGPVGLIMYLGGVFFINRQRSSTA 149 Query 89 GTV------RLVREMFKV 100 TV R+VRE KV Sbjct 150 MTVMADLGERMVRENLKV 167 > Hs4507371 Length=292 Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 0/31 (0%) Query 26 KGIKGPCLIISNHSSVSDIPLLGGFLPLQHI 56 +G P + +SNH S D P L G L L+HI Sbjct 57 RGPATPLITVSNHQSCMDDPHLWGILKLRHI 87 > At1g80950 Length=398 Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 26/121 (21%) Query 18 NIYGKENIKGIKGPCLIISNHSSVSDIPLLGGFLPLQHIR-----FVSKAEILKWPIVGH 72 N G+ + + P I+SNH S DI L H+ FV+K + K P+VG Sbjct 174 NQKGEAATEEPERPGAIVSNHVSYLDI--------LYHMSASFPSFVAKRSVGKLPLVGL 225 Query 73 AMREIGVVGFERNSLSGTVRLVREMFKVVGFRKKKEEKEKEYNKTLNPNLGFPVFLGFPE 132 + +G V +R + S FK V + +E NK+ P + FPE Sbjct 226 ISKCLGCVYVQREAKSPD-------FKGVSGTVNERVREAHSNKSA------PTIMLFPE 272 Query 133 G 133 G Sbjct 273 G 273 > 7303404 Length=376 Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%) Query 17 PNIYGKENI-----KGIKG-PCLIISNHSSVSDIPLLGGFLPLQHIRFVSKAEILKWPIV 70 P +Y +E + K KG P + +SNH S D P L G LPL V ++W + Sbjct 159 PRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGCLPLG---IVCNTYKIRWSMA 215 Query 71 GHAM 74 H + Sbjct 216 AHDI 219 > YDL052c Length=303 Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Query 6 ARCAFTCAYI----NPNIYGKENIKGIKGPCLIISNHSSVSDIPLLGGFLP 52 ARC + + + + G+EN+ K P ++I+NH S DI +LG P Sbjct 48 ARCFYHVMKLMLGLDVKVVGEENLA--KKPYIMIANHQSTLDIFMLGRIFP 96 > CE06378 Length=282 Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query 15 INPNIYGKENIKGIKGPCLIISNHSSVSDIPLLGGFLP 52 ++ +YG E + ++GP ++I NH S DI + P Sbjct 76 VHTTVYGYEKTQ-VEGPAVVICNHQSSLDILSMASIWP 112 Lambda K H 0.323 0.143 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1356426142 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40