bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_3032_orf2
Length=52
Score E
Sequences producing significant alignments: (Bits) Value
7302938 51.2 4e-07
Hs4504429 48.5 3e-06
YML126c 46.2 1e-05
SPAC4F8.14c 42.0 3e-04
Hs5031751 40.0 0.001
Hs17449881 36.6 0.012
At4g11820 35.0 0.037
ECU10g0660 26.9 9.1
> 7302938
Length=465
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 0/51 (0%)
Query 1 VPAEQFEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAYNK 51
V EQF + +RE + APY P G IS L GTYYL DV H R Y +
Sbjct 406 VAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALHRRTYER 456
> Hs4504429
Length=520
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 0/51 (0%)
Query 1 VPAEQFEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAYNK 51
V + F E + LRE+TH L Y P G I L GT+YL V KH R Y +
Sbjct 418 VAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYAR 468
> YML126c
Length=491
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 0/47 (0%)
Query 4 EQFEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAYN 50
+ +E + LREN H +KP G I L SG YYLT++ K R+Y+
Sbjct 442 KDYEAAIELRENAHLKKNFKPQGSIEHLQSGVYYLTNIDDKFRRSYD 488
> SPAC4F8.14c
Length=447
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 0/46 (0%)
Query 5 QFEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAYN 50
Q+EE + LR H + P G I L SGTYYLT + R+Y+
Sbjct 399 QYEEAIELRHQAHLKKNFTPKGSIERLRSGTYYLTGIDDMFRRSYS 444
> Hs5031751
Length=508
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 0/51 (0%)
Query 1 VPAEQFEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAYNK 51
V E+F E +N RE + + P GD + L GT+YL V +H R Y +
Sbjct 455 VSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYAR 505
> Hs17449881
Length=477
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 0/44 (0%)
Query 6 FEETLNLRENTHSLAPYKPAGDISLLSSGTYYLTDVSTKHHRAY 49
F E + LRE+TH L P G L T+YL V KH R+Y
Sbjct 380 FVENMKLREDTHHLVNSVPRGPRDSLFEETWYLAMVGEKHRRSY 423
> At4g11820
Length=461
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query 4 EQFEETLNLRENTHSLAPY--KPAGDISLLSSGTYYLTDVSTKHHRAYNK 51
E+F ET+ L E+ + + G I LL+ GTYYL +V + + R Y K
Sbjct 401 EKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGK 450
> ECU10g0660
Length=377
Score = 26.9 bits (58), Expect = 9.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query 6 FEETLNLRENTHSLAPYKPAGDISLLSSGTYYL---TDVSTKHHRA 48
F L+ REN S P KP D+ LLS Y++ + +KH +A
Sbjct 272 FSYLLSRRENVVS-GPEKPLSDLGLLSYRAYWMEVIVEYLSKHDKA 316
Lambda K H
0.311 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1158678716
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40