bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2810_orf1
Length=74
Score E
Sequences producing significant alignments: (Bits) Value
At3g07300 48.5 3e-06
SPAC343.14c 47.4 7e-06
Hs7657058 43.1 1e-04
YLR291c 42.7 2e-04
7303691 27.7 6.1
7290350 26.9 9.4
> At3g07300
Length=384
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query 7 VEAFLQQLRRREIRGSRMAAKRTAETLKRVVDAYPWKTTQE---LVDVVRYIGRRLICAA 63
V F+ +LR+R+I GS+ AK T E L+ V+ + L+D V+ +G +LI A
Sbjct 8 VVEFVNKLRKRKIEGSQATAKYTVELLRSVISHQRVPHANQAAALIDAVKAVGEQLIAAN 67
Query 64 PLDLLVANIV 73
P++L V N+V
Sbjct 68 PVELAVGNVV 77
> SPAC343.14c
Length=393
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 0/69 (0%)
Query 3 TAPFVEAFLQQLRRREIRGSRMAAKRTAETLKRVVDAYPWKTTQELVDVVRYIGRRLICA 62
T P V + + L+ R+++G A TA +++V+ W T +L+D VR +G L+ A
Sbjct 9 TYPAVSSLIADLKSRKVQGPFAVAVETALVMRQVISQTRWSTVDQLIDTVRAVGSTLVKA 68
Query 63 APLDLLVAN 71
P + N
Sbjct 69 QPTEFSCGN 77
> Hs7657058
Length=351
Score = 43.1 bits (100), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query 7 VEAFLQQLRRRE-IRGSRMAAKRTAETLKRVVDAYPWKTTQELVDVVRYIGRRLICAAPL 65
+E+F++ L+R R S A+ T L++++ + W EL++++R GRR+ A P
Sbjct 15 IESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMELIRREGRRMTAAQPS 74
Query 66 DLLVANIV 73
+ V N+V
Sbjct 75 ETTVGNMV 82
> YLR291c
Length=381
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 0/67 (0%)
Query 7 VEAFLQQLRRREIRGSRMAAKRTAETLKRVVDAYPWKTTQELVDVVRYIGRRLICAAPLD 66
++ F+ +L+RR+++GS A T + L R + A W +L++ +R +G L A P
Sbjct 22 IDTFVAKLKRRQVQGSYAIALETLQLLMRFISAARWNHVNDLIEQIRDLGNSLEKAHPTA 81
Query 67 LLVANIV 73
N++
Sbjct 82 FSCGNVI 88
> 7303691
Length=1218
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 0/44 (0%)
Query 10 FLQQLRRREIRGSRMAAKRTAETLKRVVDAYPWKTTQELVDVVR 53
F Q + ++ GS M R + R + WK+ EL DV+R
Sbjct 34 FKQNPFKMKLGGSSMGESRLGRSCLRARFVFRWKSWAELTDVLR 77
> 7290350
Length=352
Score = 26.9 bits (58), Expect = 9.4, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 0/54 (0%)
Query 19 IRGSRMAAKRTAETLKRVVDAYPWKTTQELVDVVRYIGRRLICAAPLDLLVANI 72
+ GS +T + K ++ + W+ L+ +VR + L A P + + +NI
Sbjct 21 VEGSYNITNKTLDIFKYIIMSKSWQNADALMQIVRDQCKILQAALPQETVTSNI 74
Lambda K H
0.327 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1184572648
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40