bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_2002_orf1
Length=75
Score E
Sequences producing significant alignments: (Bits) Value
7299193 40.8 6e-04
SPCC4G3.06c 40.8 6e-04
At1g07830 38.1 0.004
CE07706 37.4 0.008
YLR439w 35.4 0.028
7293454 28.9 2.6
YKL039w 27.7 5.0
At1g06870 27.3 6.7
> 7299193
Length=182
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%), Gaps = 0/32 (0%)
Query 29 GDAWPNKLLKNKSFQDLHALWFVLLKEKNLLL 60
G AW + L+ KS ++LH LWFVLLKE+N+LL
Sbjct 32 GRAWRTEELRIKSNKELHQLWFVLLKERNMLL 63
> SPCC4G3.06c
Length=144
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 0/35 (0%)
Query 29 GDAWPNKLLKNKSFQDLHALWFVLLKEKNLLLGER 63
G AW + L+ KSF DLH LW+ L+EKNLL +R
Sbjct 58 GRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQR 92
> At1g07830
Length=144
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
Query 27 ISGDAWPNKLLKNKSFQDLHALWFVLLKEKNLLLGER 63
+ G W L+ KS+ DL LW+VLLKEKN+L+ +R
Sbjct 55 VYGRGWKASELRLKSWDDLQKLWYVLLKEKNMLMTQR 91
> CE07706
Length=252
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 0/32 (0%)
Query 29 GDAWPNKLLKNKSFQDLHALWFVLLKEKNLLL 60
G +W + L+ KS DLH LW+V LKE+N+L+
Sbjct 85 GRSWTAEELRLKSNSDLHKLWYVCLKERNMLI 116
> YLR439w
Length=319
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%), Gaps = 0/26 (0%)
Query 37 LKNKSFQDLHALWFVLLKEKNLLLGE 62
L++KSF DLH+LW+ L+E+N+L E
Sbjct 98 LRHKSFNDLHSLWYNCLREQNVLARE 123
> 7293454
Length=963
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 32 WPNKLLKNKSFQDLHALWFVLLKEKNL 58
W NK+ N SF DLH LLK N+
Sbjct 859 WENKVTVNTSFTDLHEYLKHLLKSTNM 885
> YKL039w
Length=531
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query 6 ELWKGGYLDPNISASIKKELSISGDAWPNKLLKNKSFQDLHALWFVLLKEKNLLLGERWA 65
E WKG +DP IS ++KK +S ++ P ++ FQD L L E+ + + +A
Sbjct 46 EDWKGK-IDPFISFNLKKISGLSDESDPGLVVAIYDFQDFEHLGVQLPDEEMYYICDDYA 104
> At1g06870
Length=367
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query 4 IDELWKGGYL-DPNISASIKKELSISGDAWPNKLL 37
I E+ +GG + DP + + ++S G+ W NKLL
Sbjct 146 IAEVDRGGKVCDPKVKLELSDKVSNGGNGWVNKLL 180
Lambda K H
0.317 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1181410888
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40