bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_1555_orf1 Length=168 Score E Sequences producing significant alignments: (Bits) Value CE04499 38.1 0.009 7301747 35.8 0.037 CE01599 29.3 3.9 SPAC4F10.13c 28.9 5.6 At4g10590 28.5 6.6 YOR161c 28.5 7.1 At4g10570 28.1 8.0 > CE04499 Length=771 Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query 19 HHLGSFAVGGLVMGVTRPIRLLFAWAATKHLASTEDSPVVQSLRDSFRNIISPLAFVVDR 78 ++LGS A G L++ + + IR+L + H + V+ + L Sbjct 564 YNLGSIAFGSLIIAIVKIIRVLLEY--IDHKLGKSQNKAVKWFLMCLKCCFWCLEVFFKF 621 Query 79 FTSSGYIEMSISSKPFFPAMDKSHTRLNQARSPATYLHGVVAIASAIGSLFISLLIGIM 137 T + YI ++I K FF + S + + +H V I +G I+L +GI+ Sbjct 622 LTKNAYIMIAIYGKNFFSSAKDSFLLITRNIVRTVVVHKVAGILLFLGKSMITLGMGIL 680 > 7301747 Length=796 Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query 1 ERDAGWFSPLVAIGLGSIHHLGSFAVGGLVMGVTRPIRLLFAWAATKHLASTEDSPVVQS 60 +RD +F+ A +++HLG+ A G L++ + R IRL+ + K D+ V ++ Sbjct 573 KRDVPYFTLTRAFFQTAVYHLGTVAFGSLILAIVRLIRLVLEYIHEK--LKKYDNAVTRA 630 Query 61 LRDSFRNIISPLAFVVDRFTSSGYIEMSISSKPF 94 + R L + + YI +I K F Sbjct 631 ILCCMRCFFWLLETFLKFLNRNAYIMCAIHGKNF 664 > CE01599 Length=1302 Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query 61 LRDSFRNIISPLAF---VVDRFTSSGYIEMSISSKPFFPAMDKSHTRLNQARSPATYLHG 117 L++SF NI S + + V + T S ++ ++ + P F + ++ L+ A AT+ HG Sbjct 444 LKESFNNIFSSVCYTESVAEDGTVS--VKSNVRNCPQFFQLQVTYGNLHDALEAATFDHG 501 Query 118 VVAIASAIGSLF 129 + AS + +L+ Sbjct 502 LGNTASHVRNLY 513 > SPAC4F10.13c Length=992 Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 20/128 (15%) Query 11 VAIGLGSIHHLGSFAVGGLVMGVTRPIRLLFAWAATKHLASTEDSPVVQSLRDSFRNIIS 70 VA +G + +L F+ L G +R + + PV S+ S R+ S Sbjct 276 VASPVGQVDNLADFSQSPLRRGPSR-------------FPTNSNVPVGNSM--SIRDTDS 320 Query 71 PLAFVVDRFTSSGYIEMSISSKPFFP-AMDKSHTRLNQ---ARSPATYLHGVVAIASAIG 126 PL +VD+ + I+ + +S+P P A + H+ +N A SP+T + A + Sbjct 321 PLNILVDKAKAKASIKEN-ASQPVAPSASQREHSAVNSPAAAMSPSTAMFSSEAFPQHLA 379 Query 127 SLFISLLI 134 SL L+ Sbjct 380 SLIPPALL 387 > At4g10590 Length=937 Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 0/52 (0%) Query 72 LAFVVDRFTSSGYIEMSISSKPFFPAMDKSHTRLNQARSPATYLHGVVAIAS 123 L F + RFT S Y++ I + FP D ++ + ++ +YL+ + A+++ Sbjct 819 LVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNDQSYLYELYAVSN 870 > YOR161c Length=539 Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust. Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 0/124 (0%) Query 19 HHLGSFAVGGLVMGVTRPIRLLFAWAATKHLASTEDSPVVQSLRDSFRNIISPLAFVVDR 78 + GS G L++ + +R + +S +Q L F II L ++ + Sbjct 335 YSFGSICFGSLLVALIDLLRQILQMIRHDVTSSGGGQIAIQILFMVFDWIIGFLKWLAEY 394 Query 79 FTSSGYIEMSISSKPFFPAMDKSHTRLNQARSPATYLHGVVAIASAIGSLFISLLIGIMI 138 F Y +++ KP+ A ++ L + A ++ IA + S+F S + + Sbjct 395 FNHYAYSFIALYGKPYLRAAKETWYMLREKGMDALINDNLINIALGLFSMFASYMTALFT 454 Query 139 YSTL 142 + L Sbjct 455 FLYL 458 > At4g10570 Length=928 Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 0/52 (0%) Query 72 LAFVVDRFTSSGYIEMSISSKPFFPAMDKSHTRLNQARSPATYLHGVVAIAS 123 L F + RFT S Y++ I + FP D ++ + ++ +YL+ + A+++ Sbjct 798 LVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSN 849 Lambda K H 0.323 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2418402922 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40