bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_1460_orf1 Length=60 Score E Sequences producing significant alignments: (Bits) Value At2g01690 38.1 0.004 7299645 33.9 0.082 SPBC25H2.03 30.4 0.74 Hs22069041 27.7 5.3 Hs21359945 27.3 7.5 > At2g01690 Length=760 Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query 15 ETVQKAVSALTADFLSSPIANIRKGGLLGVAA--VGLAFEVRSY 56 + + K + L +F SP AN RKGGL+G+AA VGL+ E Y Sbjct 45 DKISKVIEMLIKEFAKSPQANHRKGGLIGLAAVTVGLSTEAAQY 88 > 7299645 Length=687 Score = 33.9 bits (76), Expect = 0.082, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 0/35 (0%) Query 17 VQKAVSALTADFLSSPIANIRKGGLLGVAAVGLAF 51 ++K + L D+ +S AN RKG L+G+AA+GL Sbjct 47 IRKLIEVLATDYATSRDANRRKGALIGLAAMGLGL 81 > SPBC25H2.03 Length=811 Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query 15 ETVQKAVSALTADFLSSPI--ANIRKGGLLGVAAVGLAF 51 E ++ +S L DF+ SP N GGL+G+AAV +A Sbjct 38 EKIRAVISQLANDFVYSPARGPNATFGGLIGLAAVAIAL 76 > Hs22069041 Length=368 Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Query 12 ATQETVQ--KAVSALTADFLSSPIANIRKGGLLGVAAVGLAF 51 A TVQ + L+ +F S + RKGGL+G+AA +A Sbjct 42 AQNNTVQIKHVIQTLSQEFALSQHPHSRKGGLIGLAACSIAL 83 > Hs21359945 Length=1015 Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 0/47 (0%) Query 1 LQQHEQQHQQQATQETVQKAVSALTADFLSSPIANIRKGGLLGVAAV 47 + ++Q ++ + K V L +DFL S ++ +R G G+A + Sbjct 672 INSDDEQESKEVEETATAKNVLKLLSDFLDSEVSELRTGAAEGLAKL 718 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1181901402 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40