bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1442_orf1
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
At5g41010 65.1 3e-11
CE20710 58.9 2e-09
YHR143w-a 54.7 4e-08
SPBC19C2.03 53.9 7e-08
Hs4826924 52.4 2e-07
At1g53690 43.5 1e-04
Hs20472538 30.4 0.87
Hs6715595 30.0 1.2
Hs4826696 30.0 1.2
At4g11120 28.9 2.2
ECU03g0580 28.1 4.3
Hs22043026 27.3 7.3
Hs20127446 27.3 7.3
YIL072w 26.9 9.2
> At5g41010
Length=51
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 38/46 (82%), Gaps = 0/46 (0%)
Query 31 EPVTYICGECGCDVTLQPTAAVRCRSCGSRILYKKRSRKMMQYEAR 76
EPVTY+CG+CG + TL+ ++CR CG RILYKKR+R+++QYEAR
Sbjct 6 EPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
> CE20710
Length=62
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 0/44 (0%)
Query 33 VTYICGECGCDVTLQPTAAVRCRSCGSRILYKKRSRKMMQYEAR 76
+ YICGEC + ++P A+RCR CG RILYKKR RK+M Y+AR
Sbjct 19 MIYICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
> YHR143w-a
Length=70
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 0/51 (0%)
Query 26 NNAQLEPVTYICGECGCDVTLQPTAAVRCRSCGSRILYKKRSRKMMQYEAR 76
+ A+ + YIC EC ++L T AVRC+ CG RIL K R+++++Q+EAR
Sbjct 20 SQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
> SPBC19C2.03
Length=63
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 0/61 (0%)
Query 16 QPAAKMDIEDNNAQLEPVTYICGECGCDVTLQPTAAVRCRSCGSRILYKKRSRKMMQYEA 75
P + N + + Y+C +CG T+Q +RCR CG R++YK R+++M+Q+EA
Sbjct 3 HPTSTGGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEA 62
Query 76 R 76
R
Sbjct 63 R 63
> Hs4826924
Length=58
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%), Gaps = 0/46 (0%)
Query 31 EPVTYICGECGCDVTLQPTAAVRCRSCGSRILYKKRSRKMMQYEAR 76
+P+ YICGEC + ++ +RCR CG RI+YKKR+++++ ++AR
Sbjct 13 QPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
> At1g53690
Length=61
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 0/42 (0%)
Query 25 DNNAQLEPVTYICGECGCDVTLQPTAAVRCRSCGSRILYKKR 66
D+ + V Y+CG+CG + L+ +CR CG RILYKKR
Sbjct 9 DDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50
> Hs20472538
Length=273
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query 8 RTSIHTRPQPAAKMDIEDNNAQLEPVTYICGECGCDVTLQPTAAVRCRSCGSRI 61
R S HTR I Y+CG+CG T + + AV RSC R+
Sbjct 223 RKSFHTRGNCILHGKIHTGE-----TPYLCGQCGKSFTQRGSLAVHQRSCSQRL 271
> Hs6715595
Length=1778
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query 10 SIHTRPQPAAKMDIEDNNAQLEPVTYICGECGCDVTLQPTAAVRCR 55
S+ RP+ + DIE ++ QL + GEC D+TL+ A+ C+
Sbjct 901 SLQERPEDVSPFDIEPSSGQLHSL----GECRVDITLE---ALHCQ 939
> Hs4826696
Length=1755
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query 10 SIHTRPQPAAKMDIEDNNAQLEPVTYICGECGCDVTLQPTAAVRCR 55
S+ RP+ + DIE ++ QL + GEC D+TL+ A+ C+
Sbjct 901 SLQERPEDVSPFDIEPSSGQLHSL----GECRVDITLE---ALHCQ 939
> At4g11120
Length=415
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query 11 IHTRPQPAA--KMDIEDNNAQLEPVTYICGECGCDV 44
+HT PQPA +++E N QLE + + E V
Sbjct 268 LHTSPQPAGIVSLEVEGENTQLEAIQRVGSELAMHV 303
> ECU03g0580
Length=933
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query 2 DVQIHK------RTSIHTRPQPAAKMDIEDNNAQLEPVTYICGECGC 42
DV +H+ + + + + + D+ ++ Q E VTYI G+CGC
Sbjct 179 DVHVHQDIHEFSKVFFDSLEKDSKRKDVIEDMIQGELVTYINGKCGC 225
> Hs22043026
Length=799
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query 33 VTYICGECGCDVTLQPTAAVRCRSCGSRI 61
VTY C CGC V L+P +A RC G+ +
Sbjct 457 VTYNC-TCGCSVGLEPNSA-RCNGSGTYV 483
> Hs20127446
Length=799
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query 33 VTYICGECGCDVTLQPTAAVRCRSCGSRI 61
VTY C CGC V L+P +A RC G+ +
Sbjct 457 VTYNC-TCGCSVGLEPNSA-RCNGSGTYV 483
> YIL072w
Length=605
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query 32 PVTYICG-ECGCDVTLQPTAAVRCRSC 57
PVT IC ECG +V T C+SC
Sbjct 325 PVTGICSCECGLEVPKAATVLKTCKSC 351
Lambda K H
0.322 0.133 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1178249128
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40