bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_0098_orf1
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
SPAC1D4.12 57.8 5e-09
At1g03190 53.9 8e-08
7291258 50.8 6e-07
Hs15834617 48.9 2e-06
CE28992 42.4 2e-04
> SPAC1D4.12
Length=772
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 0/67 (0%)
Query 28 LQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSI 87
L L+++ + Q S+ Q + Q+ + LQ + Q +ANPVLP DV++EA PG+I
Sbjct 263 LSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVPGNI 322
Query 88 RRAEHFV 94
RRAEHF+
Sbjct 323 RRAEHFI 329
> At1g03190
Length=758
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 40/94 (42%)
Query 1 DSERLRAEYQQLLQGMQLQQQRRREQQLQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVT 60
D+ RLRAEY +L++G+ L+ D S Q
Sbjct 277 DAGRLRAEYNRLVEGLALRG-------------------DLSGGDQW------------- 304
Query 61 VTPETFQALANPVLPSDVVEEATPGSIRRAEHFV 94
LANP LP D+++EA PG+IRRAEHFV
Sbjct 305 --------LANPALPHDILKEAVPGNIRRAEHFV 330
> 7291258
Length=745
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 0/66 (0%)
Query 29 QLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSIR 88
L + Q ++ + ++ Q+ Q L+ +V +T LANPVLP+DV+ E PG+IR
Sbjct 241 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 300
Query 89 RAEHFV 94
A+HF+
Sbjct 301 NADHFL 306
> Hs15834617
Length=760
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query 28 LQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSI 87
L+++E +Q+ +D + ++ + L+ + ET LANPVLP +V++EA PGSI
Sbjct 271 LRIKETDEQRLRD-------EYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSI 323
Query 88 RRAEHFV 94
R AEHF+
Sbjct 324 RTAEHFL 330
> CE28992
Length=751
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 0/26 (0%)
Query 69 LANPVLPSDVVEEATPGSIRRAEHFV 94
LANPVLP ++ EA PG+IR+A HF+
Sbjct 299 LANPVLPDQILHEAVPGNIRQANHFL 324
Lambda K H
0.309 0.120 0.308
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164659894
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40