bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3230_orf1 Length=94 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_400 60.8 1e-08 > 5807.cgd4_400 Length=499 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 9/89 (10%) Query 1 KLKELRSLADFDYRRVVLRCRKYLPEVQRPILQRHGVGRDLESSNGRSNNDSHRYNMRLL 60 +L ELR L+D+D +R + R R LP + PI +++G+ DL+S S+ R++ Sbjct 417 QLFELRKLSDYDEKRFLRRIRNVLPGINTPIYEKYGL--DLQSM-------SYDKAKRII 467 Query 61 EKSVSFWRFKDETIEELTRDCLKAVFGDV 89 E+SVS+WR KD+ ++ L+++ K + GD Sbjct 468 EESVSYWRTKDDQVKTLSKEIYKYIMGDT 496 Lambda K H 0.323 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22695718710 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40