bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3129_orf1 Length=109 Score E Sequences producing significant alignments: (Bits) Value 9031.ENSGALP00000026989 102 4e-21 > 9031.ENSGALP00000026989 Length=883 Score = 102 bits (253), Expect = 4e-21, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 2/108 (1%) Query 3 QFAAFKRGFFRCLDSNTLSLLL-PQELQLLLLGSQQEISLAVLHKATRYQDGYSEDSLAI 61 QF AF+RGF + + L L P+E++LL+ GS+ + L + T Y GY+ DSL I Sbjct 737 QFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRN-LDFQALEETTEYDGGYTRDSLII 795 Query 62 RRLWAILSNFTDKQKRQFLMFVTGSDRLPVGGAQALRLTIGRHGFDTD 109 R W I+ +FTD+QKR FL F TG+DR PVGG L++ I ++G DT+ Sbjct 796 REFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTE 843 Lambda K H 0.325 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22374500883 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40