bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3093_orf1 Length=142 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd8_5050 81.6 7e-15 > 5807.cgd8_5050 Length=186 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 45/164 (27%) Query 22 SFYKTYSTDPGRIPDTHEWERQPNPSLITERKRDGGARYC-----------HKCSN---- 66 S +K++ TD GR+P T EW P+P LI ERK DG R+C H C Sbjct 8 SLFKSFFTDAGRVPVTEEWRNTPDPKLIFERKDDGRLRFCKYELVYKPDRAHYCRQLNRN 67 Query 67 -----------------------GVTLIFVCYTMAATVRASID-------DSNISFEQVF 96 + L++ C ++ + + I+ D N++F ++ Sbjct 68 VLRMDHYCPWFGNCIGYFNYKFFFLALLYGCASLTYMMFSQINTLSNIWSDKNVTFGHLY 127 Query 97 FTFLGTALSFFMLAIVLPFCIFHCMIITTNCTTIEFCEKRRTGR 140 LG S +L IV+PF +FH I + N TTIEFCEKR + Sbjct 128 LVSLGICFSAVLLIIVVPFFLFHAYITSRNETTIEFCEKRSKEK 171 Lambda K H 0.330 0.140 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22741008115 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40