bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3084_orf2 Length=158 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0264 140 1e-32 > 5833.PF11_0264 Length=1531 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 2/158 (1%) Query 1 MRTKKWLDAVSTVCTAAGVPVAWKVPAVGLLCEQPYRSLQQQQIRSALQRHTLHVSGDSA 60 M KKW + +S V +P+ W P +GL CEQPYR + + + LQ ++ +S ++ Sbjct 1361 MIIKKWFNNLSKVTNELNIPITWISP-IGLPCEQPYRLGNRILVNTPLQSISV-ISYKNS 1418 Query 61 PVSRSKQRLGFPPNFIHSLDAAHMMLTALDCIGTRHIDMAAVHDSYWAHAGCIDTLATAL 120 + ++KQRLGFPPNF+HSLDA+H+M+TA + + AAVHDSYWAHA +D + + Sbjct 1419 QLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDIMNQFI 1478 Query 121 RQQFVALYQHNPLQSLYDSVKLRLPQQAAKLPPPPAKG 158 R+ F+ LY L+++Y++ ++RL + A K+P P +G Sbjct 1479 RESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQG 1516 Lambda K H 0.322 0.132 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 25621323489 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40