bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3005_orf1 Length=176 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0585w 332 4e-90 > 5833.PFL0585w Length=381 Score = 332 bits (850), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 170/176 (96%), Positives = 174/176 (98%), Gaps = 2/176 (1%) Query 1 LHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 60 LHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL Sbjct 67 LHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 126 Query 61 EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLPSGKSITLDVEPSDTIENVKAKIQDK 120 EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL +GK+ITLDVEPSDTIENVKAKIQDK Sbjct 127 EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL-TGKTITLDVEPSDTIENVKAKIQDK 185 Query 121 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLPSGKS 176 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL +GK+ Sbjct 186 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL-TGKT 240 Lambda K H 0.317 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 35336795289 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40