bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2931_orf1 Length=139 Score E Sequences producing significant alignments: (Bits) Value 4952.YALI0E09603g 142 2e-33 > 4952.YALI0E09603g Length=987 Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 5/138 (3%) Query 2 WWKAFTTGKLIQHGGIPHDRFGMTTASVEAFVKGIYNKLNLKEEEMTRIQTGGPDGDLGC 61 WWK+F TGK GGIPHD +GMT+ SV +VKGIY KL +++ + R QTGGPDGDLG Sbjct 612 WWKSFFTGKSPSLGGIPHDEYGMTSLSVREYVKGIYRKLEIEQPTVRRQQTGGPDGDLGS 671 Query 62 NALLQTKSKTIAVIDASGVLYDPKGLNKEELHRLCRLRFEGKETNAMLYNSSLLSPQGFK 121 N +L + K VID +GVLYDP GL++EEL L + R E Y++S LSP+G++ Sbjct 672 NEILLSAEKYTTVIDGAGVLYDPNGLDREELLSLAKRRVMISE-----YDASKLSPEGYR 726 Query 122 VAQDARDIILPDGTFVAS 139 V D D+ LP G V++ Sbjct 727 VLVDENDVTLPSGEVVSN 744 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23001752095 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40