bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2848_orf1 Length=85 Score E Sequences producing significant alignments: (Bits) Value 5833.PF07_0029 158 3e-38 > 5833.PF07_0029 Length=745 Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 72/84 (85%), Positives = 78/84 (92%), Gaps = 0/84 (0%) Query 1 DWEEHLAVKHFSVEGQLEFKALLFVPKRAPFDLFETRKKRNNIKLYVRRVFIMDDCEDII 60 DWE+HLAVKHFSVEGQLEFKALLF+PKRAPFD+FE RKKRNNIKLYVRRVFIMDDCE+II Sbjct 338 DWEDHLAVKHFSVEGQLEFKALLFIPKRAPFDMFENRKKRNNIKLYVRRVFIMDDCEEII 397 Query 61 PEWSNFVKGVVDSEDLPLTFPEKA 84 PEW NFVKGVVDSEDLPL ++ Sbjct 398 PEWLNFVKGVVDSEDLPLNISRES 421 Lambda K H 0.324 0.142 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22515314785 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40