bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2748_orf1 Length=117 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd1_1100 97.4 1e-19 > 5807.cgd1_1100 Length=1103 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 17/134 (12%) Query 1 GKVAGGGLSYDGMLGLSLAS-----------------RGGIDTIISLFTPINIMNELVAP 43 GKV GG+SYDGM + A+ +D + +L +P+N++ EL+ P Sbjct 518 GKVGVGGISYDGMAAIKTAALSGNNESESSSEGFRSDNNLVDAVFALSSPMNVIKELIEP 577 Query 44 GGLLCYSFLHDYTQLTNNFEQNGSPWRHMLNSPLQFPFHVLLGFLFSFGGASAVLGYEED 103 GGL+C + DY +T +FEQ GSP H L + +PF +++ FL G S V GY Sbjct 578 GGLICKPLVEDYYSITYSFEQYGSPLLHFLKTVAYYPFKLVVAFLLVIGNVSPVQGYSSI 637 Query 104 LHKAINSHKNNWRM 117 +A+ H+ NW M Sbjct 638 KKQALEMHQKNWDM 651 Lambda K H 0.322 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22540005152 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40