bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2699_orf1 Length=123 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0315 88.2 6e-17 > 5833.PF13_0315 Length=509 Score = 88.2 bits (217), Expect = 6e-17, Method: Composition-based stats. Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query 1 NIFIFHIPKDWGRQQLLSAFGGFGAVVSCYVALDKESGRNKGFGFVSYTTPAAAAAAVNA 60 N+FIFH+P +W + L+ AF FG ++S +A +K +GRN+GF FVSY + +AAAA++ Sbjct 370 NLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQ 429 Query 61 MNNCVVSNKRLDVSIKKGEEKHAALHLLSPA--AAQQAKRQQQQHQQQQALQQQPHMQLQ 118 MN + NK+L V++KKGEE ++ + QQ R Q+ Q A QP++ Sbjct 430 MNGFMALNKKLKVTVKKGEEDEMKKYVNQNGVNSFQQVPRVQKAIPAQPA-SMQPNLAYH 488 Query 119 Q 119 Q Sbjct 489 Q 489 Lambda K H 0.319 0.129 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22834639773 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40