bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_2667_orf1
Length=109
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  3702.AT4G24450.1                                                     108    4e-23


> 3702.AT4G24450.1
Length=1278

 Score =  108 bits (270),  Expect = 4e-23, Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query  1     PRVIAFPSKSVALTCKQCLIFRSDSNGEDLEGFAGAGLFESIPAERAFWLPLCYWRQRLV  60
             P VI++PSK + L  K  +IFRSDSN EDLEG AGAGL++S+  + A  + + Y R+ L+
Sbjct  1171  PTVISYPSKRIGLYSKPSIIFRSDSNNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLI  1230

Query  61    SDRLYRDALLSKISKVGRLVEEVYGAPQDIEGVVIGDDTVALVQTRPQV  109
              D+ +R  L S I++ G ++E +YG PQDIEGVV G   + +VQ RPQV
Sbjct  1231  MDKSFRVRLFSAIAEAGNVIESIYGCPQDIEGVVKGGH-IYIVQARPQV  1278



Lambda     K      H
   0.323    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22374500883


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40