bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2553_orf1 Length=128 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_4340 172 3e-42 > 5807.cgd2_4340 Length=563 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 1/129 (0%) Query 1 ELILLAENYTEAIDVWSIGCIFSELLSMIEENVESHCDRGPLFPGSSCFPLSPDQK-NGD 59 ELILL ENYTEAID+WS+GCIF+ELL+M++ENV + DR PLFPGSSCFPLSPD K + Sbjct 358 ELILLQENYTEAIDMWSVGCIFAELLNMLKENVAYYSDRSPLFPGSSCFPLSPDNKQQTE 417 Query 60 DSRLQTRGNKDQLNVIFNVLGTPTEEEIEALESNEAKQYIRTFPPKEAHDLAERFSASSP 119 D R + RGN+DQLN+IFNVLG+P +E+IE LE +AK+YIR F + DL RF +S Sbjct 418 DYRFKIRGNRDQLNMIFNVLGSPLDEDIEVLEKEDAKRYIRIFSKRTGIDLQTRFPGASS 477 Query 120 EALNLLKRM 128 ++++LLK+M Sbjct 478 QSIDLLKKM 486 Lambda K H 0.314 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22424899233 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40