bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2281_orf1 Length=161 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_3820 116 3e-25 > 5807.cgd6_3820 Length=467 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 53/115 (46%), Positives = 85/115 (73%), Gaps = 10/115 (8%) Query 49 GCAPHEKFDPKYSSTFSPIRSLTGDPAV-AFIQYGTGACVLRMGRDIVEIGGIKVPNQAI 107 GC PH K+DPK S+++ + GD ++ +IQYGTG+CVL+ G++++ IG +K+ +Q+ Sbjct 131 GCEPHNKYDPKLSTSYQKL----GDGSLETYIQYGTGSCVLKFGKEVINIGKLKIEDQSF 186 Query 108 GLAVEESTHPFADLPFDGLVGLGFPDVSGEEGLPSSALPIVDQTVKEK-VLDRNV 161 G+A+EEST PFA+LPFDGLVGLGFPD + ++ + +P + + +KE+ +L RN+ Sbjct 187 GMAIEESTSPFAELPFDGLVGLGFPDKNSKK----NNIPTIVENIKERNILPRNL 237 Lambda K H 0.318 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26764363279 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40