bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2253_orf2 Length=159 Score E Sequences producing significant alignments: (Bits) Value 5833.MAL3P4.18 119 4e-26 > 5833.MAL3P4.18 Length=953 Score = 119 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 36/157 (22%) Query 2 GSFQAFVEAKECVGNFDARLFSVGDVHRIAIFDLRVMNLDRNDSNILVAPVVGYQKEPSA 61 GS Q F++++E VGN+D + FS+ D+H+IAI D+RVMNLDRND NILV+P+ Sbjct 266 GSLQEFIDSRESVGNYDYKQFSIRDIHKIAILDIRVMNLDRNDGNILVSPL--------- 316 Query 62 GGSSRSLRASGRVVKQIQSKLLRSVSAVGSCGTQLCVADKAAVAGAETAASAASGVLTPD 121 K L+ SC + +K + E ++T D Sbjct 317 -------------------KTLKD-----SCNQFVYRNNKFTSSNNEDMLKR---IITID 349 Query 122 GKPTKFRLIPIDHGMILTDVLDVATLDLVWFDWPQSK 158 KP+++ LIPIDHG+IL ++DVA +DLVWF+WPQ K Sbjct 350 KKPSRYTLIPIDHGLILPHIMDVAEIDLVWFEWPQIK 386 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26246233818 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40