bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2178_orf1 Length=67 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0630 100 1e-20 > 5833.PF14_0630 Length=889 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 43/67 (64%), Positives = 53/67 (79%), Gaps = 0/67 (0%) Query 1 VVFGGATGGGSLSPEELYLLGLRKEPHLQWLAVPLQGSTPGRRYGHVMGYSTPNIILHGG 60 V++GGATGGGSLS ++LY+L LRKE W+ VP +G TPGRRYGHVM YS PN+I+ GG Sbjct 93 VIYGGATGGGSLSLDDLYILDLRKEQKYTWMTVPTKGVTPGRRYGHVMVYSKPNLIVFGG 152 Query 61 NDGERPL 67 NDG+ L Sbjct 153 NDGQNTL 159 Lambda K H 0.317 0.144 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22920963996 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40