bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2118_orf1 Length=148 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0647 76.3 3e-13 > 5833.PF14_0647 Length=1656 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query 6 TTGLQSPYLMSTKIHEFFTIRPEGISRIITSLDTWETLWRWLPDILRYSTPFLIFSSSHD 65 +T SPYLM+ K+ F+ R S +I S WE +W +P +R PFL ++S D Sbjct 1467 STKCPSPYLMNVKLKTFYRPRLNDNSTLINSFH-WENIWEKIPSNIRSLDPFLTYASKKD 1525 Query 66 GFTLSALLNRA-LFYSAPFIFLATSDNHDVFGFFSPVSFDAHNKNSACFSYSEAFVFTLS 124 G+ L LL + P I + + + D+ GFF P S + + S AF+FT + Sbjct 1526 GYNLQMLLEKTERNKKKPMILILKTFDCDLIGFFCPFSLNRDYNFVSTSDKSSAFIFTFN 1585 Query 125 PLPRAFWWTGANGVFLRVRN 144 + W+G N + +++ Sbjct 1586 SNFNFYKWSGKNNTSVLIKD 1605 Lambda K H 0.327 0.140 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22943761524 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40