bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2012_orf1 Length=88 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0330 64.7 7e-10 > 5833.PF10_0330 Length=191 Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/37 (75%), Positives = 33/37 (89%), Gaps = 0/37 (0%) Query 52 QISSSRKQCDFAKLLMAGYDLELNNKNTQDFNVVFHG 88 Q S +RKQCDF KL+MAGYDLELNN +TQDF+V+FHG Sbjct 4 QTSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHG 40 Lambda K H 0.329 0.144 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23142708390 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40