bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1838_orf1 Length=119 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0649 91.3 8e-18 > 5833.PF14_0649 Length=2558 Score = 91.3 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 0/69 (0%) Query 1 ALCSQQRWLMGAIAQLVDNAMHPSVGCRNVWIKFEETPDKDPMLSVQDDGQGLDYPAMNK 60 + C+ Q+WL GA A LVDN +H NV+IK+E TP+ D MLS+QDDG+GLD+ AMN+ Sbjct 1280 SFCTLQKWLFGAFANLVDNCVHAHNPAENVFIKYELTPEHDGMLSIQDDGEGLDFNAMNR 1339 Query 61 LLRLYGSFE 69 +LR+YG+++ Sbjct 1340 VLRMYGNYK 1348 Lambda K H 0.323 0.139 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22381075488 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40