bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1806_orf1 Length=123 Score E Sequences producing significant alignments: (Bits) Value 7165.AGAP003497-PA 164 5e-40 > 7165.AGAP003497-PA Length=457 Score = 164 bits (416), Expect = 5e-40, Method: Composition-based stats. Identities = 72/123 (58%), Positives = 98/123 (79%), Gaps = 6/123 (4%) Query 1 TTDKELREYFEKFGELVMAQVRKDPKTGFSKGFGFIRFADYENQLKVVSTRHCIDSRYCD 60 TT++ LREYFE FGEL++ Q++KD KTG SKG+GFIRFA +E+Q+K +S RH IDSR+CD Sbjct 126 TTEESLREYFETFGELLVVQIKKDSKTGQSKGYGFIRFARFESQMKALSKRHLIDSRWCD 185 Query 61 VRLPVSRDGFGNEIRNREEFNKKIFIGRLTSDITNEDLKEYFGKYGEVSDVFVPKPFRGF 120 V++P S+D + + + KIF+GRLT DI ++D+++YF KYGEV+DVF+PKPFR F Sbjct 186 VKVPSSKD------QTQHQMPSKIFLGRLTEDINSDDIRDYFSKYGEVTDVFIPKPFRAF 239 Query 121 AFV 123 AFV Sbjct 240 AFV 242 Lambda K H 0.324 0.143 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22834639773 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40