bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1630_orf2 Length=66 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_2250 103 1e-21 > 5807.cgd2_2250 Length=165 Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 47/66 (71%), Positives = 58/66 (87%), Gaps = 0/66 (0%) Query 1 FKAWVSGMRALLIAISMTFFQVFDLPVFWPILLIYFILLFILTMKQQVKKMIKYKYLPFS 60 FK W+S +A + +I +TFF+VFDLPVFWPILLIYFI LFILTM+QQ++ MIKY+Y+PFS Sbjct 80 FKFWISATKATIASIFLTFFEVFDLPVFWPILLIYFIFLFILTMRQQIQHMIKYRYVPFS 139 Query 61 WGKQTY 66 WGKQTY Sbjct 140 WGKQTY 145 Lambda K H 0.338 0.147 0.489 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22990495724 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40