bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1565_orf1 Length=88 Score E Sequences producing significant alignments: (Bits) Value 365044.Pnap_2792 90.5 1e-17 > 365044.Pnap_2792 Length=368 Score = 90.5 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Query 2 IQPFTDWTLNKNAAYLHYCDNETIHGLEFPSFPDFSSFSLPSPRYLVADFASNLGTKQIP 61 + P W L ++A+Y+H C NETIHG+EF PD + +P LV DF+S++ ++ + Sbjct 129 LPPPATWQLRRDASYVHVCTNETIHGVEFQELPDLKALGSDAP--LVIDFSSHVASRPVD 186 Query 62 WNIIDLAYAGAQKNIGIAGVTLVVVHK 88 W+ + LA+ GAQKN+G AGVTLVVV + Sbjct 187 WSKVGLAFGGAQKNLGPAGVTLVVVRE 213 Lambda K H 0.321 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23142708390 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40