bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1558_orf3 Length=179 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1035w 203 2e-51 > 5833.PFF1035w Length=664 Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/179 (56%), Positives = 137/179 (76%), Gaps = 0/179 (0%) Query 1 LQADQPVIPVPVYQEIQKRDKYIEVPQVEVKDSIVPKVYNQSAVHDVPKVHVDCGERNLA 60 L+ DQPV VPVYQ+ RDK +E E++D + P Y+Q HDVP V + E+ + Sbjct 58 LEGDQPVFNVPVYQDKYIRDKIVECVNYEIQDVVQPTFYSQETKHDVPTVELLYKEKKVN 117 Query 61 IETEKVIERDVQVPVHVGYAHQFVPKWDIREVPRPVPKYEGEQQIIEIEVPQIEYKDTYV 120 I EK+IE+ V+V + +GY F P WD+RE+PR +PKYEGEQ+II++E+PQI+Y D +V Sbjct 118 IPQEKIIEKPVEVDMPIGYTPVFSPTWDVREIPRVIPKYEGEQKIIQVEIPQIKYVDKFV 177 Query 121 EKEVVVDVKEKIVPKVTEVVKEVEVMQYEWKEKYQDVPVYKYVPKFDVELDCPPPLIVP 179 EKE++VD+KEKI+P++ EV KE++V++Y+WKEKYQDVPV KYVPK DVELDCPPPLIVP Sbjct 178 EKEIIVDIKEKIIPRINEVEKEIDVVKYKWKEKYQDVPVCKYVPKIDVELDCPPPLIVP 236 Lambda K H 0.316 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 36430169559 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40