bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_1557_orf2
Length=135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  3702.AT1G31290.1                                                    85.5    4e-16


> 3702.AT1G31290.1
Length=1194

 Score = 85.5 bits (210),  Expect = 4e-16, Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query  8     GKNMKVVLILVLKHHNVRVALTQANTAGRRPTYNVPSGTMVDNTIVNPMYKSFLLNSHFS  67
             G N ++ +I+  K H  R      +  GR    NVPSGT+VD TI++P    F L S   
Sbjct  1024  GYNPQITVIVAQKRHQTRFFPATTSKDGRAKG-NVPSGTVVDTTIIHPFEYDFYLCSQHG  1082

Query  68    PLGTAKPSQYIIVRDDLSLSTDQVGRLVFVSCFNSVRTRDVIATPTPLRYAYLAAQRARI  127
              +GT+KP+ Y ++ D++  +++Q+ +L+F  CF   R    +A   P+ YA  AA R R+
Sbjct  1083  AIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCFTFTRCTKPVALVPPVSYADKAASRGRV  1142

Query  128   LITA  131
                A
Sbjct  1143  YYEA  1146



Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22597853330


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40