bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_1535_orf1
Length=92
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  3702.AT1G08620.1                                                    99.4    3e-20


> 3702.AT1G08620.1
Length=1183

 Score = 99.4 bits (246),  Expect = 3e-20, Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query  2    HWGAPKIWYVVPPSRAPSVERTLQSYLAD--RDPHYVLHSLTVQLPPSLFVENNIPVYRI  59
            HWGAPK+WY V    A  +E  ++ +L D   +   +LH L  QL PS      +PV+R 
Sbjct  394  HWGAPKLWYGVGGKDAVKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSKLKTAGVPVHRC  453

Query  60   EQHAKEFVMLWPRTYHAGFNAGFNCNEACNFAP  92
             QHA EFV+ +PR YHAGFN+GFNC EA N AP
Sbjct  454  VQHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAP  486



Lambda     K      H
   0.323    0.137    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22844715270


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40