bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1503_orf1 Length=177 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_4170 82.8 4e-15 > 5807.cgd5_4170 Length=445 Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 6/92 (6%) Query 86 KSRCAVLGFPSRDRQRGFDNKRMDCVLAASDECEHFDDFQAQIGVGCSCKKGLKPESPNQ 145 + R +V G S+ Q F++K + + S E Q G+G C+KGLKPESPNQ Sbjct 129 RRRLSVTGMLSQRAQETFESKAEEVIGNDSGNSE------LQRGIGYVCRKGLKPESPNQ 182 Query 146 DDFSFIRCSSFGVYGVFDGHGPCGHQASDFVH 177 DDF ++ ++G++GVFDGHGP GH S+F+ Sbjct 183 DDFFILKTENWGLFGVFDGHGPFGHDVSNFIQ 214 Lambda K H 0.320 0.136 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 35195248557 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40