bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1386_orf1 Length=147 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0303 142 3e-33 > 5833.PF11_0303 Length=380 Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 64/122 (52%), Positives = 90/122 (73%), Gaps = 0/122 (0%) Query 11 GAGEDMKGLLNAFYFAKYREFMQYLVPIAKRVKTDIYLSPHYLYFIRSIRLRAYQQYLDP 70 + ED+ L++FY YR FM+ + IA RVK D YL HY YFIR+ R+RAY+Q+L+P Sbjct 255 SSDEDLHTYLHSFYHCDYRTFMEKTIKIAMRVKRDRYLGRHYRYFIRNTRVRAYKQFLEP 314 Query 71 YKSVTLINMANAFGVSPEFIEAEVSSFIASGRPVCKVDRVNGIIAAHRPDDRSMSYLPII 130 +K+VTL NMA AFGVS EFIE E+SSFIA+G+ CK+D+VNG I +++P++R+ Y I Sbjct 315 FKNVTLKNMAFAFGVSEEFIENEISSFIANGKLNCKIDKVNGSIESNQPNERNTMYQNTI 374 Query 131 RQ 132 ++ Sbjct 375 KK 376 Lambda K H 0.326 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23033159460 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40