bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1310_orf2 Length=151 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0096 119 3e-26 > 5833.PF13_0096 Length=640 Score = 119 bits (297), Expect = 3e-26, Method: Composition-based stats. Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 0/77 (0%) Query 75 KRVRRTCPYLGTINKHMLDFDFEKVCSICLSNQHVYACLVCGRYFQGRGRSTFAFMHALE 134 K+ R CPYL TIN+++LDFDFEK+CSI LSN HVYACLVCG YFQG G+ T A+ H+LE Sbjct 82 KKRNRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGLYFQGIGKGTHAYTHSLE 141 Query 135 QRHFVYVNLTTCKVYCL 151 + H+V++NL TCK C+ Sbjct 142 KNHYVFINLETCKTCCI 158 Lambda K H 0.311 0.119 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22675567716 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40