bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1229_orf1 Length=202 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0121 110 4e-23 > 5833.PF10_0121 Length=231 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 99/160 (61%), Gaps = 5/160 (3%) Query 12 PIHLQEKSSLYTAEEILLSSSFLPFIKGILIPHGLIINRIEKMAYDICNYYKEGELHLLC 71 P+ +++ Y + ++ + + ++ +L+P+G+I NRIEK+AYDI Y E H+LC Sbjct 16 PVFVKDDDG-YDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILC 74 Query 72 LLKGARTFFGDL---TAAIYNHKSGCTKLDIF-HHFLQIRSYKNGEATEDVSFLGGDLST 127 LLKG+R FF L + I+N+ + T +F H+++++SY N ++T + + DLS Sbjct 75 LLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSC 134 Query 128 IKGKEVIIIDDVIETGKTITYIYKWLNKFNPRGVRTAALI 167 +KGK V+I++D+I+TGKT+ ++L KF + V A L Sbjct 135 LKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLF 174 Lambda K H 0.314 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 48999515920 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40