bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1189_orf1 Length=278 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_1810 459 4e-128 > 5807.cgd3_1810 Length=431 Score = 459 bits (1182), Expect = 4e-128, Method: Compositional matrix adjust. Identities = 208/247 (84%), Positives = 235/247 (95%), Gaps = 0/247 (0%) Query 2 LSGGIGIPAIYWYGIEGDYNVMIIELLGPSLEDLFSICNRKLSLKTVLMLADQMLNRIEF 61 L+GGIG+P ++WYGIEGDYNVMI++LLGPSLEDLF+ICNRK SLKTVLMLADQMLNRIEF Sbjct 59 LAGGIGVPTVHWYGIEGDYNVMILDLLGPSLEDLFTICNRKFSLKTVLMLADQMLNRIEF 118 Query 62 VHSRHFIHRDIKPDNFLIGRGKKMSIVFAIDFGLAKKYRDPRTQSHIPYREGKNLTGTAR 121 VHS++FIHRDIKPDNFLIGRGKK+++V+ IDFGLAKKYRDP++Q+HIPYREGKNLTGTAR Sbjct 119 VHSKNFIHRDIKPDNFLIGRGKKLNVVYIIDFGLAKKYRDPKSQAHIPYREGKNLTGTAR 178 Query 122 YASINTHLGIEQSRRDDLEALGYVLMYFNRGSLPWQGLKATTKKDKYDKIMEKKMATPVE 181 YASINTHLGIEQSRRDDLEALGYVLMYFNRG+LPWQGLKAT+KKDKYDKIME+K+ATP+E Sbjct 179 YASINTHLGIEQSRRDDLEALGYVLMYFNRGTLPWQGLKATSKKDKYDKIMERKIATPIE 238 Query 182 VLCKQFPFEFITYLNYCRSLRFEDRPDYSYLRRLFKDLFFREGYQYDFIFDWTFLHAERE 241 LCK PFEFIT+LNYCR+LRFEDRPDY+YLRRLFKDLFFREGYQYDFIFDW+FL E++ Sbjct 239 TLCKHHPFEFITFLNYCRALRFEDRPDYAYLRRLFKDLFFREGYQYDFIFDWSFLQPEKD 298 Query 242 RERQRRS 248 R R S Sbjct 299 RRRTGNS 305 Lambda K H 0.325 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 91589248440 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40