bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1122_orf1 Length=297 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_730 102 1e-20 > 5807.cgd3_730 Length=419 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query 4 IFLLGHSLGGAVAIDLAHCRGEHLKGIVVVNTFTSLRDVIHDVAPFSKGFDWLLDSVQRM 63 IFL GHS+GGAVAIDLA ++ G+++ NTFT+++ V V P K F + +QR+ Sbjct 238 IFLYGHSIGGAVAIDLA--SKYNVTGVILENTFTNIKSVAFRVYPIFKYFGFFFKFIQRL 295 Query 64 KLVSLEKVRRMQVPALFVSGREDELIPPRHMDVLHNACSSPINWK--LDIIRGDHNSTWL 121 K S+ K+ R++ P LFV G EDE+IPP H L+ SP + K + G HN TW+ Sbjct 296 KFDSVSKISRVKSPILFVVGNEDEIIPPTHSVELYMKAGSPKSLKKIYLVSGGSHNDTWI 355 Query 122 IGVIPYGRKLQEFITAAIAWSEAARTTDAGAL--SSREES 159 G + + L +FI AI +S+ + L S+EE+ Sbjct 356 KGGMEFYLMLLQFIYNAIDYSKPELEVSSNNLINKSQEET 395 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 102013186730 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40