bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1089_orf1 Length=165 Score E Sequences producing significant alignments: (Bits) Value 5833.PF07_0066 68.9 5e-11 > 5833.PF07_0066 Length=1125 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 0/65 (0%) Query 85 IGYAYVAFVDCEASANARKALNGRKFGGRVVEAHYYSELNFLRRNFSSPSPNFKKGHSYL 144 IG A++ F + E++ ARK L+GRKFG ++EA+Y+SE FL +NF + NFKK HS L Sbjct 1047 IGCAFIHFENIESATKARKELSGRKFGANIIEANYFSEKKFLMKNFKNVKYNFKKSHSSL 1106 Query 145 HSPPL 149 + L Sbjct 1107 FNVNL 1111 Lambda K H 0.304 0.125 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 29254071491 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40