bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1067_orf1 Length=250 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0180w 477 1e-133 > 5833.PFI0180w Length=453 Score = 477 bits (1228), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 234/250 (93%), Positives = 245/250 (98%), Gaps = 0/250 (0%) Query 1 GKEDAANNFARGHYTIGKEIVDLSLDRIRKLADQCTGLQGFLMFNAVGGGTGSGLGCLLL 60 GKEDAANNFARGHYTIGKE++D+ LDRIRKLAD CTGLQGFLMF+AVGGGTGSG GCL+L Sbjct 95 GKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLML 154 Query 61 ERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICR 120 ERLSVDYGKKSKLNFC WPSPQVSTAVVEPYNSVLSTHSLLEHTDVA+MLDNEAIYDICR Sbjct 155 ERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICR 214 Query 121 RNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNPVPYPRIHFILSSYAP 180 RNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTN VPYPRIHF+LSSYAP Sbjct 215 RNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAP 274 Query 181 IISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT 240 ++SAEKAYHEQLSV+EITNSAFEPA+MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT Sbjct 275 VVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAT 334 Query 241 IKTKRTIQFV 250 IKTKRTIQFV Sbjct 335 IKTKRTIQFV 344 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 75630515125 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40