bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1044_orf1 Length=111 Score E Sequences producing significant alignments: (Bits) Value 5833.PF08_0054 197 1e-49 > 5833.PF08_0054 Length=677 Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 93/103 (90%), Positives = 97/103 (94%), Gaps = 0/103 (0%) Query 9 KKSQIFTTYADNQPGVLIQVYEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDA 68 KKSQIFTTYADNQPGVLIQVYEGERA+TKDNNLLGKFHLDGIPPAPR VPQIEVTFDIDA Sbjct 436 KKSQIFTTYADNQPGVLIQVYEGERALTKDNNLLGKFHLDGIPPAPRKVPQIEVTFDIDA 495 Query 69 NGIMNVTATEKNTGKSNQITITNDKGRLSQGEIDRMVAEAEKY 111 NGI+NVTA EK+TGK N ITITNDKGRLSQ EIDRMV +AEKY Sbjct 496 NGILNVTAVEKSTGKQNHITITNDKGRLSQDEIDRMVNDAEKY 538 Lambda K H 0.311 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23016794144 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40