bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_1000_orf1
Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  5833.PFI0945w                                                        216    3e-55


> 5833.PFI0945w
Length=207

 Score =  216 bits (551),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 98/197 (49%), Positives = 135/197 (68%), Gaps = 12/197 (6%)

Query  20   HYCSPYNAEKRRLNEEQAMMATTAAAKQEAGAAAAAVTMPPAYRDMELILFPEGSLRDCN  79
            ++ SPY AEKRR +E                     + MP  Y DM+LILFPEGSL++ N
Sbjct  5    NFNSPYQAEKRRTSE------------NADNCKLETLNMPINYSDMDLILFPEGSLKNIN  52

Query  80   GNIVSQQHLIGKSVGLYFADSNSPKCRSFLPFLLQFYRTVNEGGSYQKIEVIFVSVDEDE  139
              +V+++HL GKSV ++F++ + PKCR+FLPFL Q+Y+T+NEGGS QKIEVIFVS+D D 
Sbjct  53   NTVVNEKHLFGKSVAIFFSNGSDPKCRAFLPFLQQYYKTINEGGSSQKIEVIFVSIDPDR  112

Query  140  SSYLDHRKHMPWLSIDFNNPLRTILLRHFRIGDEFTVPSLGEGHRAGLPALVVVGADGRD  199
             S+ DH+KHMPWL +D  +PL  IL +HFR+ +   VP  G G R+ +P L+VVG+DGR+
Sbjct  113  KSFEDHKKHMPWLYVDVADPLTDILKKHFRVTNSHEVPFYGSGPRSDVPCLIVVGSDGRE  172

Query  200  AQFLQVGGGRDEGERAI  216
            +Q L +  GRDEGE+ +
Sbjct  173  SQLLHICSGRDEGEKGL  189



Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 56730992589


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40