bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0960_orf1 Length=405 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0614 94.0 8e-18 > 5833.PF14_0614 Length=1502 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 46/235 (19%) Query 196 FVKEAGLDIPWYMVNGEAESTISSSAPYRYHYTRQDANFHNPNWLYKSVITMVAN----- 250 F EA IP+Y V GE + S + HY+++ + PN Y N Sbjct 761 FASEA---IPFYSVLGEKDYFYFPSEQIQEHYSKRIPGYFMPNNYYCVNYDFTYNPVKKN 817 Query 251 ------------LTTATGGTE-----DQEFTVHVISIDTWALFGGTPFYDNLGQYQNNMI 293 GT+ ++F I IDTWAL G P N ++ Sbjct 818 VNGDEDDDDDEEEEEGDSGTDRKVKTQEKFRASFIFIDTWALMVGFPIIRNYRAFREQFN 877 Query 294 ALSNALYHSAKAKADWIIVQGHHPLTSTGPEAEEARLTYIDDMVKSSRPRGPEHRLV-DL 352 LS LY SAK K+DWI V GHHPL S+G ++ S H ++ D Sbjct 878 WLSKTLYESAK-KSDWIFVVGHHPLISSGRRSDNY-----------SYEEHSFHDIIRDF 925 Query 353 LTSYQVDAYISGHDNVLEYVSMADLDKNSTLAFITSGGGTRIM--SGILGRGWLG 405 L +Y VDAY S HD+++EY+ +D +G +R++ + +GRG+ G Sbjct 926 LFNYHVDAYFSAHDHLMEYIKFGSVD------LFINGSSSRVLFDNSSMGRGYFG 974 Lambda K H 0.314 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 162972628775 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40