bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0930_orf1 Length=185 Score E Sequences producing significant alignments: (Bits) Value 30611.ENSOGAP00000006995 71.2 2e-11 > 30611.ENSOGAP00000006995 Length=475 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 5/66 (7%) Query 2 RLGAGPLDAEEIKRHPFFESVDWDLLLAKKIEPPFKPHLRSHEDSKYFPADVKREPVLSD 61 RLGAGP DA E++ HPFF ++W+ LLA+K+EPPFKP L+S ED F + ++ PV Sbjct 286 RLGAGPGDAGEVQAHPFFRHINWEDLLARKVEPPFKPLLQSEEDVSQFDSKTRQTPV--- 342 Query 62 EGDGPD 67 D PD Sbjct 343 --DSPD 346 Lambda K H 0.311 0.127 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 40134932565 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40