bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0740_orf3 Length=288 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd2_4350 244 2e-63 > 5807.cgd2_4350 Length=1281 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 183/294 (62%), Gaps = 10/294 (3%) Query 1 EPEVWLFGGTAFNVQQVAFIPEYYLGGFTKEACERRMPRAVAERLLPP---SAIRELPIP 57 +PE+++ G FN+++ F+P+Y LG + C R +P + ++L P S+ + P Sbjct 303 DPELYMLDGLVFNLRKQGFLPDYILGKMKAKPCVRTLPTELISKILSPDKYSSSSKGP-- 360 Query 58 EDAFVLGSIECITSASALMLHYD--ADGRPMHEERNATWERLLIQVLKANQTLGSLRAYF 115 F IECI A A ++ YD DG P + RN WE+ L+ +LK N+ G R F Sbjct 361 --GFSDAKIECIVGAEAFLMVYDIFDDGTPENLSRNLLWEQSLVSILKDNRDWGRARISF 418 Query 116 QAFRSRDDELKASTAESKDVVYVVFTFFLLASYSTALNFSCDLYRSKLFSSLMGFFAAFM 175 AFRSRDDELKAST+E+ D++ V TF LL Y NFS DLY+ K +S L G FAA + Sbjct 419 SAFRSRDDELKASTSENSDILLVGLTFTLLFFYVGVANFSFDLYKMKTYSGLAGLFAALL 478 Query 176 GLGAGMGIVCYMKVAMVPTVLICPFLVLGIGVDDVFVLLNAYCMGYTTHDPEQRCIDTLK 235 GL +GMG++ V+ VPTVL+ PFL++G V+ +FV++NAY GYT ++RC L+ Sbjct 479 GLASGMGLMSIFGVSFVPTVLVTPFLIMGAAVNYLFVIVNAYSTGYTIPSTKERCRLALQ 538 Query 236 TSGLGITITTLTNLISFGVGSFST-YLSIRNFCVYSAMALLLGYIFVLTFFFPV 288 S +GITIT T L+SF +G+ YLSIRNFC++SA +++ Y++V F FP+ Sbjct 539 DSVIGITITMCTGLVSFSIGAVGEPYLSIRNFCLFSAASIIFTYLYVFLFMFPI 592 Lambda K H 0.328 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 96612488609 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40